Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B14_RS13065 Genome accession   NZ_CP014842
Coordinates   2505870..2506232 (-) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain SCDB 14     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2500870..2511232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS13040 (B14_02604) flhB 2502377..2503456 (-) 1080 WP_003181806.1 flagellar biosynthesis protein FlhB -
  B14_RS13045 (B14_02605) fliR 2503456..2504232 (-) 777 WP_003181804.1 flagellar biosynthetic protein FliR -
  B14_RS13050 (B14_02606) fliQ 2504240..2504509 (-) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  B14_RS13055 (B14_02607) fliP 2504525..2505190 (-) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  B14_RS13060 (B14_02608) fliZ 2505183..2505857 (-) 675 WP_003181797.1 flagella biosynthesis regulatory protein FliZ -
  B14_RS13065 (B14_02609) pilH 2505870..2506232 (-) 363 WP_003181796.1 response regulator Machinery gene
  B14_RS13070 (B14_02610) fliY 2506259..2507392 (-) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  B14_RS13075 (B14_02611) fliM 2507382..2508380 (-) 999 WP_003181789.1 flagellar motor switch protein FliM -
  B14_RS13080 (B14_02612) fliL 2508416..2508847 (-) 432 WP_003181788.1 flagellar basal body-associated protein FliL -
  B14_RS13085 - 2508844..2509059 (-) 216 WP_003181786.1 flagellar FlbD family protein -
  B14_RS13090 (B14_02613) flgG 2509102..2509893 (-) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  B14_RS13095 (B14_02614) flgD 2509921..2510388 (-) 468 WP_003181782.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=150358 B14_RS13065 WP_003181796.1 2505870..2506232(-) (pilH) [Bacillus licheniformis strain SCDB 14]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=150358 B14_RS13065 WP_003181796.1 2505870..2506232(-) (pilH) [Bacillus licheniformis strain SCDB 14]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375