Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B14_RS12115 Genome accession   NZ_CP014842
Coordinates   2331591..2331962 (-) Length   123 a.a.
NCBI ID   WP_016885441.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 14     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2326591..2336962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS12090 sspO 2329477..2329623 (+) 147 WP_003182252.1 small acid-soluble spore protein O -
  B14_RS12095 - 2329665..2329811 (+) 147 WP_003182250.1 small acid-soluble spore protein P -
  B14_RS12100 (B14_02418) - 2329947..2330354 (+) 408 WP_003182248.1 Hsp20/alpha crystallin family protein -
  B14_RS12105 (B14_02419) - 2330559..2330987 (+) 429 WP_003182245.1 DUF2621 domain-containing protein -
  B14_RS12110 (B14_02420) - 2331023..2331517 (-) 495 WP_085959522.1 CcdC family protein -
  B14_RS12115 (B14_02421) pilH 2331591..2331962 (-) 372 WP_016885441.1 response regulator Machinery gene
  B14_RS12120 (B14_02422) - 2332044..2332751 (-) 708 WP_003182240.1 cytochrome c biogenesis protein CcdA -
  B14_RS12125 (B14_02423) - 2332994..2333155 (+) 162 WP_229107189.1 aspartyl-phosphate phosphatase Spo0E family protein -
  B14_RS12130 (B14_02424) - 2333236..2333454 (-) 219 WP_003182236.1 YneF family protein -
  B14_RS12135 (B14_02425) sirA 2333539..2333976 (-) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  B14_RS12140 (B14_02426) recP/tkt 2334131..2336134 (-) 2004 WP_009328229.1 transketolase Machinery gene
  B14_RS12145 (B14_02427) - 2336301..2336534 (-) 234 WP_003182231.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13951.47 Da        Isoelectric Point: 4.6948

>NTDB_id=150347 B14_RS12115 WP_016885441.1 2331591..2331962(-) (pilH) [Bacillus licheniformis strain SCDB 14]
MTRVLIVDDAKFMRDKIREILETEDLQVAGEAENGEEAVLLYQELQPDLVIMDITMPVKNGIEALKDMIQLNPKVKVIMC
TAMRQKRIVVEVIEAGAKDFIVKPFEETKVVEAIRHVLGNACR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=150347 B14_RS12115 WP_016885441.1 2331591..2331962(-) (pilH) [Bacillus licheniformis strain SCDB 14]
ATGACAAGGGTTTTAATTGTTGATGATGCAAAATTTATGAGAGATAAAATTAGAGAAATACTTGAAACAGAAGACTTGCA
AGTCGCGGGTGAAGCCGAGAACGGGGAAGAAGCTGTTTTGCTTTATCAAGAGCTGCAGCCGGACTTGGTTATCATGGATA
TTACGATGCCTGTGAAAAACGGGATAGAAGCTTTAAAGGATATGATCCAGCTGAACCCGAAAGTGAAAGTGATCATGTGT
ACGGCCATGCGGCAAAAGCGGATCGTCGTTGAGGTGATCGAAGCCGGAGCCAAGGACTTCATCGTCAAGCCTTTCGAGGA
AACGAAAGTCGTCGAAGCGATTCGGCATGTGCTCGGAAATGCTTGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.585

100

0.366

Multiple sequence alignment