Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B14_RS02045 Genome accession   NZ_CP014842
Coordinates   420466..421104 (-) Length   212 a.a.
NCBI ID   WP_003186252.1    Uniprot ID   Q65DI5
Organism   Bacillus licheniformis strain SCDB 14     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 415466..426104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS02025 (B14_00400) - 415927..417276 (-) 1350 WP_003186270.1 M28 family peptidase -
  B14_RS02030 (B14_00401) - 417506..418264 (+) 759 WP_003186268.1 IclR family transcriptional regulator -
  B14_RS02035 (B14_00402) - 418282..419235 (+) 954 WP_080623557.1 sugar kinase -
  B14_RS02040 (B14_00403) - 419264..420349 (-) 1086 Protein_372 MMPL family transporter -
  B14_RS02045 (B14_00404) vraR 420466..421104 (-) 639 WP_003186252.1 response regulator Regulator
  B14_RS02050 (B14_00405) - 421097..422320 (-) 1224 WP_011198417.1 sensor histidine kinase -
  B14_RS22810 - 422590..422760 (+) 171 WP_003186246.1 hypothetical protein -
  B14_RS22400 (B14_00406) - 422757..422933 (+) 177 WP_085959885.1 hypothetical protein -
  B14_RS02055 (B14_00408) - 423055..423918 (+) 864 WP_003186243.1 glycosyltransferase family 8 protein -
  B14_RS22815 (B14_00409) - 424066..424362 (+) 297 WP_223307126.1 hypothetical protein -
  B14_RS02060 (B14_00410) - 424384..425004 (+) 621 WP_223307064.1 NAD(P)-dependent oxidoreductase -
  B14_RS02065 (B14_00411) - 425035..425415 (-) 381 WP_003186240.1 VOC family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23718.78 Da        Isoelectric Point: 6.0356

>NTDB_id=150284 B14_RS02045 WP_003186252.1 420466..421104(-) (vraR) [Bacillus licheniformis strain SCDB 14]
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEMSGLEAIKLIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD

Nucleotide


Download         Length: 639 bp        

>NTDB_id=150284 B14_RS02045 WP_003186252.1 420466..421104(-) (vraR) [Bacillus licheniformis strain SCDB 14]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCACTA
CATCATCATAGGAGAGGCGGAAAATGGCAAAGCAGCAGTTCGCCTTGCAGATGAATTAAAACCGGATATTATTCTCATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAAGCCATTAAACTAATAAAAGAAAAACACGACATCCCCATCATTATTTTG
ACTACGTATAATGAAGATCACTTAATGATCGAAGGAATTGAATTAGGGGCGAAAGGATATCTATTGAAGGATACAAGTTC
AGAAACCCTTTTTCATACGATGGACGCAGCAATAAGAGGAAACGTGCTATTGCAGCCTGATATCTTAAAACGTCTGCAAG
AAATCCAATTGGAGCGGATGAAGAAGCAGAGCAGTGATACGCAGCTGACAGAAAAGGAAGTCATAGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGAGAACAGTAAAGTCTAGACTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAAGCAGTGACGATTGCCATGCAAAGAGGCGTTCTGACATTAGACTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65DI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.528

0.363