Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BaDB11_RS22025 Genome accession   NZ_CP014795
Coordinates   4243474..4243905 (+) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain SCK B11     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 4238474..4248905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS22005 (BaDB11_04428) - 4238520..4239440 (+) 921 WP_021837473.1 dipeptidase -
  BaDB11_RS22010 (BaDB11_04429) tdh 4239565..4240608 (+) 1044 WP_155761921.1 L-threonine 3-dehydrogenase -
  BaDB11_RS22015 (BaDB11_04430) - 4240624..4241799 (+) 1176 WP_009328481.1 glycine C-acetyltransferase -
  BaDB11_RS22020 (BaDB11_04431) miaB 4241943..4243472 (+) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BaDB11_RS22025 (BaDB11_04432) ymcA 4243474..4243905 (+) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  BaDB11_RS22030 (BaDB11_04433) cotE 4244148..4244696 (+) 549 WP_003181968.1 outer spore coat protein CotE -
  BaDB11_RS22035 (BaDB11_04434) hexA 4244807..4247416 (+) 2610 WP_011197985.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=150264 BaDB11_RS22025 WP_003181967.1 4243474..4243905(+) (ymcA) [Bacillus licheniformis strain SCK B11]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=150264 BaDB11_RS22025 WP_003181967.1 4243474..4243905(+) (ymcA) [Bacillus licheniformis strain SCK B11]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867

Multiple sequence alignment