Detailed information NTG0150221

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BaDB11_RS17295
• Genome accession: NZ_CP014795
• Coordinates: 3324142..3325260 (+)
• Length: 372 a.a.
• NCBI ID: WP_003179978.1
• Uniprot ID: Q65M68
• Organism: Bacillus licheniformis strain SCK B11
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3319142..3330260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BaDB11_RS17275 (BaDB11_03467)	-	3319283..3321007 (-)	1725	WP_003179977.1	T7SS effector LXG polymorphic toxin	-
BaDB11_RS17280 (BaDB11_03468)	-	3321273..3321569 (+)	297	WP_011201595.1	DUF3800 domain-containing protein	-
BaDB11_RS17285 (BaDB11_03469)	-	3321800..3322240 (-)	441	WP_009329006.1	DUF6756 family protein	-
BaDB11_RS17290 (BaDB11_03470)	-	3322257..3323816 (-)	1560	WP_011197679.1	T7SS effector LXG polymorphic toxin	-
BaDB11_RS17295 (BaDB11_03471)	rapC	3324142..3325260 (+)	1119	WP_003179978.1	Rap family tetratricopeptide repeat protein	Regulator
BaDB11_RS17300 (BaDB11_03472)	-	3326053..3327378 (+)	1326	WP_009329004.1	TGS domain-containing protein	-
BaDB11_RS17305	-	3327625..3327843 (+)	219	WP_003179982.1	hypothetical protein	-
BaDB11_RS17310 (BaDB11_03473)	aroD	3328231..3328995 (+)	765	WP_003179983.1	type I 3-dehydroquinate dehydratase	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 43946.57 Da
• Isoelectric Point: 6.5966

>NTDB_id=150221 BaDB11_RS17295 WP_003179978.1 3324142..3325260(+) (rapC) [Bacillus licheniformis strain SCK B11]
METIPSSEVGIKINRWYNEIQKLNVIEAERLKAEVHLAIERMEEDQDLLSYYQLMNFRHELMLEYLFPAEKKLSKSDYLR
EIEGQGRKLSGLLEYYFSFFTGMYHFSRGKYIKAIKAYRAAEKKLTKVSDKIEKAEFYYKMAEVFYHMKQTHMSMYYVSL
AYDIYKSYDAYVIRRINCLFVVAGNYIDLSTHDQALPHLLSAKESAEDIQNKAIVAKALLNVAYCYNAMERPTKAIEYFH
KAIDVAKEIKAKELTQAYYDLALIHFRNNENIEGRKFYEKALESARVFEDELFLCLLDVLEALFIKSANKSEVLETMKPL
RDSRGYPYLEELALEAALFYTRNERPNDSIFFYDQMVQAQKQIKRGDFLYEI

Nucleotide

• Length: 1119 bp

>NTDB_id=150221 BaDB11_RS17295 WP_003179978.1 3324142..3325260(+) (rapC) [Bacillus licheniformis strain SCK B11]
TTGGAGACTATCCCGTCTTCAGAAGTTGGAATCAAAATAAACCGCTGGTACAACGAAATTCAAAAATTAAACGTAATAGA
AGCAGAACGATTAAAGGCGGAAGTTCACTTAGCTATAGAAAGAATGGAAGAAGATCAGGACTTGCTTTCCTATTATCAGC
TTATGAATTTTAGACATGAGTTAATGTTGGAATATCTTTTCCCGGCAGAAAAAAAGCTGAGCAAATCTGATTATCTTAGG
GAAATTGAGGGACAGGGAAGAAAATTGTCAGGCTTGCTCGAATACTATTTTTCCTTTTTCACCGGAATGTATCATTTTTC
TCGCGGAAAATACATAAAGGCAATCAAGGCATATAGAGCAGCAGAAAAAAAGTTGACGAAAGTTTCAGATAAAATAGAAA
AGGCTGAATTCTATTATAAGATGGCGGAAGTGTTTTATCATATGAAACAGACTCATATGTCAATGTATTATGTGTCTCTC
GCTTATGATATTTATAAATCCTATGATGCATATGTGATTCGAAGAATTAATTGTCTATTCGTTGTTGCTGGGAATTACAT
TGATTTATCAACCCATGATCAAGCTTTACCGCATCTTTTAAGCGCTAAGGAATCCGCGGAAGACATTCAAAACAAGGCGA
TCGTTGCAAAGGCTCTTTTAAATGTAGCATATTGTTATAATGCAATGGAGAGACCAACAAAAGCTATTGAATACTTTCAT
AAGGCGATTGATGTAGCAAAGGAAATAAAGGCAAAAGAACTGACTCAGGCTTATTATGATTTGGCATTAATTCACTTTCG
AAATAACGAAAATATTGAAGGACGAAAATTTTATGAAAAGGCGCTTGAAAGTGCGCGGGTATTTGAAGATGAATTATTCC
TGTGTCTGTTGGATGTTTTAGAGGCACTGTTTATAAAATCAGCTAATAAGTCAGAGGTACTAGAAACAATGAAACCATTA
CGGGATAGTCGTGGTTACCCCTATCTTGAGGAACTGGCATTAGAAGCAGCTCTATTCTATACTAGGAATGAGCGGCCAAA
TGATTCCATATTTTTTTATGATCAGATGGTGCAGGCTCAGAAACAAATCAAAAGGGGCGACTTTCTGTATGAAATCTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (215-285)

3D structure

• AlphaFold DB: Q65M68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.5	100	0.379
rapF	Bacillus subtilis subsp. subtilis str. 168	36.702	100	0.371