Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BaDB11_RS16595 Genome accession   NZ_CP014795
Coordinates   3196057..3196773 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain SCK B11     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3191057..3201773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS16575 (BaDB11_03332) - 3191525..3191911 (+) 387 WP_003179739.1 DUF1992 domain-containing protein -
  BaDB11_RS16580 (BaDB11_03333) - 3191973..3192698 (+) 726 Protein_3241 alanine/glycine:cation symporter family protein -
  BaDB11_RS16585 (BaDB11_03334) treP 3192861..3194273 (+) 1413 WP_069500302.1 PTS system trehalose-specific EIIBC component -
  BaDB11_RS16590 (BaDB11_03335) treC 3194347..3196035 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  BaDB11_RS16595 (BaDB11_03336) treR 3196057..3196773 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  BaDB11_RS16600 (BaDB11_03337) - 3196880..3197572 (+) 693 WP_075218303.1 N-acetyltransferase -
  BaDB11_RS16605 (BaDB11_03338) - 3197699..3199024 (+) 1326 WP_075218302.1 NTTRR-F1 domain -
  BaDB11_RS16610 (BaDB11_03339) - 3199244..3200977 (+) 1734 WP_080618597.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=150217 BaDB11_RS16595 WP_009329065.1 3196057..3196773(+) (treR) [Bacillus licheniformis strain SCK B11]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=150217 BaDB11_RS16595 WP_009329065.1 3196057..3196773(+) (treR) [Bacillus licheniformis strain SCK B11]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412