Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BaDB11_RS06970 Genome accession   NZ_CP014795
Coordinates   1282294..1282767 (-) Length   157 a.a.
NCBI ID   WP_003184615.1    Uniprot ID   Q65FU5
Organism   Bacillus licheniformis strain SCK B11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277294..1287767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS06930 (BaDB11_01398) - 1277807..1278595 (+) 789 WP_003184598.1 ABC transporter ATP-binding protein -
  BaDB11_RS06935 (BaDB11_01399) - 1278558..1279382 (+) 825 WP_009329424.1 ABC transporter permease -
  BaDB11_RS06940 (BaDB11_01400) ytkD 1279413..1279889 (-) 477 WP_003184602.1 RNA deprotection pyrophosphohydrolase -
  BaDB11_RS06945 (BaDB11_01401) - 1280084..1280407 (-) 324 WP_003184604.1 hypothetical protein -
  BaDB11_RS06950 (BaDB11_01402) - 1280455..1280859 (-) 405 WP_003184607.1 phage holin family protein -
  BaDB11_RS06955 (BaDB11_01403) - 1281011..1281448 (-) 438 WP_003184609.1 Dps family protein -
  BaDB11_RS06960 (BaDB11_01404) ytzI 1281582..1281725 (+) 144 WP_011201722.1 YtzI protein -
  BaDB11_RS06965 (BaDB11_01405) - 1281719..1282162 (-) 444 WP_009329425.1 FixH family protein -
  BaDB11_RS06970 (BaDB11_01406) luxS 1282294..1282767 (-) 474 WP_003184615.1 S-ribosylhomocysteine lyase Regulator
  BaDB11_RS06975 (BaDB11_01407) yidD 1282905..1283132 (+) 228 WP_003184617.1 membrane protein insertion efficiency factor YidD -
  BaDB11_RS06980 (BaDB11_01408) - 1283129..1283698 (-) 570 WP_003184618.1 beta-class carbonic anhydrase -
  BaDB11_RS06985 (BaDB11_01409) - 1283825..1285006 (+) 1182 WP_009329426.1 GTP-binding protein -
  BaDB11_RS06990 (BaDB11_01410) - 1285105..1286136 (+) 1032 WP_009329427.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  BaDB11_RS06995 (BaDB11_01411) - 1286222..1286467 (-) 246 WP_003184624.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17885.47 Da        Isoelectric Point: 5.5531

>NTDB_id=150168 BaDB11_RS06970 WP_003184615.1 1282294..1282767(-) (luxS) [Bacillus licheniformis strain SCK B11]
MPSVESFELDHNAVKAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRTYAEKYDHFDIIDIS
PMGCQTGYYLVVSGEPKVEEIVDLLEDTFKEAVEVTEIPAANEKQCGQAKLHDLEGAKRMMRFWLSQNKEDLLKVFG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=150168 BaDB11_RS06970 WP_003184615.1 1282294..1282767(-) (luxS) [Bacillus licheniformis strain SCK B11]
ATGCCTTCAGTTGAAAGTTTTGAGCTTGACCATAATGCGGTAAAAGCGCCTTATGTCAGACACTGCGGCGTCCACAAAGT
GGGAACGGACGGCGTCGTCAACAAGTTTGACATCCGTTTTTGCCAGCCGAATAAACAGGCAATGAAACCTGATACGATTC
ATACTTTGGAGCACCTTCTTGCATTTACAATCCGCACATATGCGGAAAAATATGACCACTTTGATATTATCGACATTTCG
CCGATGGGCTGCCAAACGGGCTATTACCTGGTGGTAAGCGGTGAGCCGAAAGTGGAAGAAATCGTTGATTTGCTTGAGGA
TACGTTCAAAGAAGCCGTTGAAGTGACTGAAATTCCGGCGGCTAACGAAAAACAGTGCGGCCAGGCAAAGCTTCACGATC
TTGAAGGCGCAAAGCGCATGATGCGTTTTTGGCTTTCGCAAAATAAAGAAGACCTGCTCAAGGTGTTTGGGTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65FU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

35.802

100

0.369