Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BaDB11_RS03185 Genome accession   NZ_CP014795
Coordinates   568979..570475 (-) Length   498 a.a.
NCBI ID   WP_009327989.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCK B11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 563979..575475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS03160 (BaDB11_00646) - 564696..565481 (-) 786 WP_003183052.1 metallophosphoesterase -
  BaDB11_RS03165 (BaDB11_00647) - 565650..567080 (+) 1431 WP_016886315.1 IS1182 family transposase -
  BaDB11_RS03170 (BaDB11_00648) - 567109..567498 (-) 390 WP_229098737.1 YpbF family protein -
  BaDB11_RS03175 (BaDB11_00649) - 567620..568339 (-) 720 WP_003183055.1 LysM peptidoglycan-binding domain-containing protein -
  BaDB11_RS03180 (BaDB11_00650) - 568341..568985 (-) 645 WP_003183057.1 CPBP family intramembrane glutamic endopeptidase -
  BaDB11_RS03185 (BaDB11_00651) recS 568979..570475 (-) 1497 WP_009327989.1 RecQ family ATP-dependent DNA helicase Machinery gene
  BaDB11_RS03190 (BaDB11_00652) - 570468..571526 (-) 1059 WP_003183062.1 helix-turn-helix domain-containing protein -
  BaDB11_RS03195 (BaDB11_00653) - 571790..572038 (+) 249 WP_003183064.1 ferredoxin -
  BaDB11_RS03200 (BaDB11_00654) - 572192..572770 (-) 579 WP_003183066.1 ECF transporter S component -
  BaDB11_RS03205 (BaDB11_00655) serA 573313..574890 (+) 1578 WP_017473935.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55884.40 Da        Isoelectric Point: 7.7924

>NTDB_id=150136 BaDB11_RS03185 WP_009327989.1 568979..570475(-) (recS) [Bacillus licheniformis strain SCK B11]
MDKLHQALRRYFGYHAFKKGQETIIKSVLEGRDTVAMLPTGGGKSLCYQLPGLLLDGTVLIVSPLLSLMEDQVQQLKMRG
EKRAAALNSALTHKEKNDVLNRLHRLKYLYISPEALQSGQMLKKLQLLNVSLFVVDEAHCISQWGHDFRPDYSKLGDIKA
LLGHPVTLALTATATEATLKDISEILGLKAANYLIHSVDRPNIALHIEKLRDTAEKTERLTGLVQKLQGPGLVYCPTRKW
AEELADKLRKEANLRTGFYHGGMEASDRMLIQQQFIRNQLDVVCCTNAFGMGVDKPDIRYVIHFSLPQTIEAYLQEIGRA
GRDGKRSVSILLKAPGDEEIQEQLIQMEALSQSDIGFLYEKLAGVKDERCRREALQLAGLSETQARHFLHLYEKVHHLGG
DGRAVIQREMDSRRQLKLKKAAGFAAVTETEGCFRESLLAYFNEQKKPPKTDETACCTSCGLSLEAYEVKGDRPSMNKLT
AWEEELDTIFAASCDRVC

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=150136 BaDB11_RS03185 WP_009327989.1 568979..570475(-) (recS) [Bacillus licheniformis strain SCK B11]
ATGGATAAACTTCATCAGGCGCTCCGCAGGTATTTTGGTTATCATGCTTTTAAAAAAGGCCAGGAAACGATCATCAAAAG
CGTGCTGGAGGGACGGGACACGGTGGCGATGCTTCCGACAGGAGGCGGGAAATCGCTGTGCTATCAGCTCCCAGGGCTTT
TGTTAGACGGCACCGTCCTGATCGTCTCGCCGCTTTTGTCTTTAATGGAAGACCAGGTGCAGCAATTGAAGATGCGCGGA
GAGAAGAGAGCTGCCGCCTTGAACAGCGCTTTGACACACAAAGAAAAAAATGACGTATTAAACCGGCTTCACCGCCTCAA
ATATCTGTACATTTCACCAGAAGCGCTTCAGTCCGGCCAAATGCTGAAAAAGCTTCAATTGCTCAATGTCAGCCTTTTTG
TCGTTGATGAAGCCCACTGCATCTCACAATGGGGGCATGATTTCAGGCCTGATTATTCGAAGCTTGGAGACATCAAGGCG
CTCCTCGGTCATCCCGTCACTCTGGCGCTTACAGCAACGGCAACCGAAGCGACATTAAAGGACATTTCGGAAATCCTGGG
GCTTAAAGCCGCCAATTATTTGATTCATTCGGTCGACCGTCCGAACATTGCGCTTCATATTGAAAAGCTGAGGGATACTG
CTGAGAAGACGGAGCGGCTGACAGGGCTGGTTCAAAAGCTGCAAGGTCCTGGCCTTGTTTATTGCCCGACGAGAAAATGG
GCTGAAGAACTGGCTGACAAGCTCCGTAAAGAAGCAAACTTGAGAACGGGATTTTATCATGGCGGGATGGAGGCAAGCGA
CAGGATGCTGATCCAGCAGCAGTTTATCCGCAATCAGCTTGATGTGGTCTGCTGTACAAACGCCTTCGGTATGGGAGTGG
ACAAGCCGGATATCAGATATGTGATCCACTTTAGCCTCCCGCAGACGATTGAGGCGTATCTGCAGGAAATCGGACGTGCC
GGCAGGGATGGAAAGCGGAGCGTCAGCATTTTGCTGAAGGCTCCGGGAGACGAGGAAATCCAGGAGCAGCTGATTCAAAT
GGAAGCCCTCTCCCAAAGCGATATCGGCTTTTTATACGAAAAGCTTGCAGGAGTGAAAGATGAACGCTGCCGGCGGGAAG
CTCTGCAGCTGGCCGGTTTATCGGAAACGCAAGCCCGCCATTTTCTCCATCTTTATGAGAAGGTGCATCATCTGGGCGGC
GATGGCCGGGCGGTCATTCAGAGGGAGATGGACAGCCGCAGGCAGCTCAAATTGAAAAAAGCGGCGGGATTCGCCGCCGT
CACCGAAACAGAAGGGTGTTTCAGGGAAAGCTTGCTCGCTTATTTTAATGAACAAAAAAAGCCGCCGAAAACGGATGAAA
CAGCGTGCTGCACATCCTGCGGTTTAAGTCTTGAAGCATACGAAGTCAAAGGAGACCGTCCGTCTATGAACAAATTGACA
GCGTGGGAAGAAGAATTGGATACCATATTTGCCGCCAGCTGTGATCGTGTATGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-181)

Helicase conserved C-terminal domain (Helicase_C)

(216-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

58.621

98.996

0.58