Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B37_RS13940 Genome accession   NZ_CP014794
Coordinates   2645374..2645847 (-) Length   157 a.a.
NCBI ID   WP_003184615.1    Uniprot ID   Q65FU5
Organism   Bacillus licheniformis strain SCCB 37     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2640374..2650847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B37_RS13900 (B37_02805) - 2640886..2641674 (+) 789 WP_017474680.1 ABC transporter ATP-binding protein -
  B37_RS13905 (B37_02806) - 2641637..2642461 (+) 825 WP_017474681.1 ABC transporter permease -
  B37_RS13910 (B37_02807) ytkD 2642492..2642968 (-) 477 WP_003184602.1 RNA deprotection pyrophosphohydrolase -
  B37_RS13915 (B37_02808) - 2643163..2643486 (-) 324 WP_003184604.1 hypothetical protein -
  B37_RS13920 (B37_02809) - 2643534..2643938 (-) 405 WP_003184607.1 phage holin family protein -
  B37_RS13925 (B37_02810) - 2644091..2644528 (-) 438 WP_080626989.1 Dps family protein -
  B37_RS13930 (B37_02811) ytzI 2644662..2644805 (+) 144 WP_020452680.1 YtzI protein -
  B37_RS13935 (B37_02812) - 2644799..2645242 (-) 444 WP_080626990.1 FixH family protein -
  B37_RS13940 (B37_02813) luxS 2645374..2645847 (-) 474 WP_003184615.1 S-ribosylhomocysteine lyase Regulator
  B37_RS13945 (B37_02814) yidD 2645985..2646212 (+) 228 WP_003184617.1 membrane protein insertion efficiency factor YidD -
  B37_RS13950 (B37_02815) - 2646209..2646778 (-) 570 WP_003184618.1 beta-class carbonic anhydrase -
  B37_RS13955 (B37_02816) - 2646905..2648086 (+) 1182 WP_061578675.1 GTP-binding protein -
  B37_RS13960 (B37_02817) - 2648185..2649216 (+) 1032 WP_009329427.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  B37_RS13965 (B37_02818) - 2649302..2649547 (-) 246 WP_003184624.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17885.47 Da        Isoelectric Point: 5.5531

>NTDB_id=150076 B37_RS13940 WP_003184615.1 2645374..2645847(-) (luxS) [Bacillus licheniformis strain SCCB 37]
MPSVESFELDHNAVKAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRTYAEKYDHFDIIDIS
PMGCQTGYYLVVSGEPKVEEIVDLLEDTFKEAVEVTEIPAANEKQCGQAKLHDLEGAKRMMRFWLSQNKEDLLKVFG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=150076 B37_RS13940 WP_003184615.1 2645374..2645847(-) (luxS) [Bacillus licheniformis strain SCCB 37]
ATGCCTTCAGTTGAAAGTTTTGAGCTTGACCATAATGCGGTAAAAGCGCCTTATGTCAGACACTGCGGCGTCCACAAAGT
GGGAACGGACGGCGTCGTCAACAAGTTTGACATCCGTTTTTGCCAGCCGAATAAACAGGCAATGAAACCTGATACGATTC
ATACTTTGGAGCACCTTCTTGCATTTACAATCCGCACATATGCGGAAAAATATGACCACTTTGATATTATCGACATTTCG
CCGATGGGCTGCCAAACGGGCTATTACCTGGTGGTAAGCGGTGAGCCGAAAGTGGAAGAAATCGTTGATTTGCTTGAGGA
TACGTTCAAAGAAGCCGTTGAAGTGACTGAAATTCCGGCGGCTAACGAAAAACAGTGCGGCCAGGCAAAGCTTCACGATC
TTGAAGGCGCAAAGCGCATGATGCGTTTTTGGCTTTCGCAAAATAAAGAAGACCTGCTCAAGGTGTTTGGGTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65FU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

35.802

100

0.369