Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACX60_RS01650 Genome accession   NZ_CP012004
Coordinates   346984..347985 (+) Length   333 a.a.
NCBI ID   WP_000079196.1    Uniprot ID   A0A1E3M9M7
Organism   Acinetobacter baumannii strain ATCC 17978-mff     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341984..352985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACX60_RS19420 - 343564..343694 (-) 131 Protein_310 hypothetical protein -
  ACX60_RS01625 (ACX60_01625) rpoZ 343733..344011 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACX60_RS01630 (ACX60_01630) gmk 344084..344713 (-) 630 WP_000015937.1 guanylate kinase -
  ACX60_RS01635 (ACX60_01635) ispH 344836..345786 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACX60_RS01640 (ACX60_01640) fimU 345956..346429 (+) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACX60_RS01645 (ACX60_01645) pilV 346423..346983 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACX60_RS01650 (ACX60_01650) pilW 346984..347985 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  ACX60_RS01655 (ACX60_01655) pilX 347982..348800 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACX60_RS01660 (ACX60_01660) pilY1 348812..352666 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35803.50 Da        Isoelectric Point: 6.1010

>NTDB_id=150053 ACX60_RS01650 WP_000079196.1 346984..347985(+) (pilW) [Acinetobacter baumannii strain ATCC 17978-mff]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMIDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=150053 ACX60_RS01650 WP_000079196.1 346984..347985(+) (pilW) [Acinetobacter baumannii strain ATCC 17978-mff]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTAGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGATAGATCAGAATGTGCATGCTGCTGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997

Multiple sequence alignment