Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   B34_RS19960 Genome accession   NZ_CP014793
Coordinates   3817060..3818178 (+) Length   372 a.a.
NCBI ID   WP_003179978.1    Uniprot ID   Q65M68
Organism   Bacillus licheniformis strain SCDB 34     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3812060..3823178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS19940 (B34_04031) - 3814028..3814243 (+) 216 WP_003179974.1 hypothetical protein -
  B34_RS24160 - 3814420..3814557 (+) 138 Protein_3906 N-acetylmuramoyl-L-alanine amidase -
  B34_RS19950 (B34_04033) - 3814646..3814984 (-) 339 WP_069500368.1 hypothetical protein -
  B34_RS19955 (B34_04034) - 3815010..3816734 (-) 1725 WP_003179977.1 T7SS effector LXG polymorphic toxin -
  B34_RS19960 (B34_04035) rapC 3817060..3818178 (+) 1119 WP_003179978.1 Rap family tetratricopeptide repeat protein Regulator
  B34_RS19965 (B34_04036) - 3818971..3820296 (+) 1326 WP_071583540.1 TGS domain-containing protein -
  B34_RS19970 - 3820543..3820761 (+) 219 WP_003179982.1 hypothetical protein -
  B34_RS19975 (B34_04037) aroD 3821149..3821913 (+) 765 WP_003179983.1 type I 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43946.57 Da        Isoelectric Point: 6.5966

>NTDB_id=149955 B34_RS19960 WP_003179978.1 3817060..3818178(+) (rapC) [Bacillus licheniformis strain SCDB 34]
METIPSSEVGIKINRWYNEIQKLNVIEAERLKAEVHLAIERMEEDQDLLSYYQLMNFRHELMLEYLFPAEKKLSKSDYLR
EIEGQGRKLSGLLEYYFSFFTGMYHFSRGKYIKAIKAYRAAEKKLTKVSDKIEKAEFYYKMAEVFYHMKQTHMSMYYVSL
AYDIYKSYDAYVIRRINCLFVVAGNYIDLSTHDQALPHLLSAKESAEDIQNKAIVAKALLNVAYCYNAMERPTKAIEYFH
KAIDVAKEIKAKELTQAYYDLALIHFRNNENIEGRKFYEKALESARVFEDELFLCLLDVLEALFIKSANKSEVLETMKPL
RDSRGYPYLEELALEAALFYTRNERPNDSIFFYDQMVQAQKQIKRGDFLYEI

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=149955 B34_RS19960 WP_003179978.1 3817060..3818178(+) (rapC) [Bacillus licheniformis strain SCDB 34]
TTGGAGACTATCCCGTCTTCAGAAGTTGGAATCAAAATAAACCGCTGGTACAACGAAATTCAAAAATTAAACGTAATAGA
AGCAGAACGATTAAAGGCGGAAGTTCACTTAGCTATAGAAAGAATGGAAGAAGATCAGGACTTGCTTTCCTATTATCAGC
TTATGAATTTTAGACATGAGTTAATGTTGGAATATCTTTTCCCGGCAGAAAAAAAGCTGAGCAAATCTGATTATCTTAGG
GAAATTGAGGGACAGGGAAGAAAATTGTCAGGCTTGCTCGAATACTATTTTTCCTTTTTCACCGGAATGTATCATTTTTC
TCGCGGAAAATACATAAAGGCAATCAAGGCATATAGAGCAGCAGAAAAAAAGTTGACGAAAGTTTCAGATAAAATAGAAA
AGGCTGAATTCTATTATAAGATGGCGGAAGTGTTTTATCATATGAAACAGACTCATATGTCAATGTATTATGTGTCTCTC
GCTTATGATATTTATAAATCCTATGATGCATATGTGATTCGAAGAATTAATTGTCTATTCGTTGTTGCTGGGAATTACAT
TGATTTATCAACCCATGATCAAGCTTTACCGCATCTTTTAAGCGCTAAGGAATCCGCGGAAGACATTCAAAACAAGGCGA
TCGTTGCAAAGGCTCTTTTAAATGTAGCATATTGTTATAATGCAATGGAGAGACCAACAAAAGCTATTGAATACTTTCAT
AAGGCGATTGATGTAGCAAAGGAAATAAAGGCAAAAGAACTGACTCAGGCTTATTATGATTTGGCATTAATTCACTTTCG
AAATAACGAAAATATTGAAGGACGAAAATTTTATGAAAAGGCGCTTGAAAGTGCGCGGGTATTTGAAGATGAATTATTCC
TGTGTCTGTTGGATGTTTTAGAGGCACTGTTTATAAAATCAGCTAATAAGTCAGAGGTACTAGAAACAATGAAACCATTA
CGGGATAGTCGTGGTTACCCCTATCTTGAGGAACTGGCATTAGAAGCAGCTCTATTCTATACTAGGAATGAGCGGCCAAA
TGATTCCATATTTTTTTATGATCAGATGGTGCAGGCTCAGAAACAAATCAAAAGGGGCGACTTTCTGTATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)

Tetratricopeptide repeat (TPR_12)

(215-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65M68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.379
  rapF Bacillus subtilis subsp. subtilis str. 168

36.702

100

0.371