Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   B34_RS06310 Genome accession   NZ_CP014793
Coordinates   1142867..1143070 (-) Length   67 a.a.
NCBI ID   WP_080624077.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 34     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1137867..1148070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS06260 (B34_01271) - 1137869..1138681 (-) 813 WP_080624068.1 hypothetical protein -
  B34_RS06265 (B34_01273) recT 1138849..1139799 (-) 951 WP_080624069.1 recombination protein RecT -
  B34_RS06270 (B34_01274) - 1139792..1140742 (-) 951 WP_080624070.1 YqaJ viral recombinase family protein -
  B34_RS06275 (B34_01275) - 1140742..1140921 (-) 180 WP_017474946.1 hypothetical protein -
  B34_RS06280 (B34_01276) - 1141042..1141254 (-) 213 WP_080624071.1 YqaI family protein -
  B34_RS06285 (B34_01277) - 1141267..1141461 (-) 195 WP_080624072.1 hypothetical protein -
  B34_RS06290 (B34_01278) - 1141589..1141777 (-) 189 WP_080624073.1 hypothetical protein -
  B34_RS06295 (B34_01279) - 1141778..1142044 (-) 267 WP_080624074.1 hypothetical protein -
  B34_RS06300 (B34_01280) - 1142041..1142568 (-) 528 WP_080624075.1 helix-turn-helix domain-containing protein -
  B34_RS06310 (B34_01282) comR/comR2 1142867..1143070 (-) 204 WP_080624077.1 helix-turn-helix domain-containing protein Regulator
  B34_RS06315 (B34_01283) - 1143194..1143616 (+) 423 WP_231124461.1 helix-turn-helix domain-containing protein -
  B34_RS06320 (B34_01284) - 1143812..1144312 (+) 501 WP_080624078.1 ImmA/IrrE family metallo-endopeptidase -
  B34_RS06325 (B34_01285) - 1144305..1145477 (+) 1173 WP_080624079.1 hypothetical protein -
  B34_RS06330 (B34_01286) - 1145524..1147056 (+) 1533 WP_167511160.1 recombinase family protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7516.94 Da        Isoelectric Point: 10.2144

>NTDB_id=149879 B34_RS06310 WP_080624077.1 1142867..1143070(-) (comR/comR2) [Bacillus licheniformis strain SCDB 34]
MKNVLGLRIKELRKEKGLTQFYLAGELGYKHSSIISEIEAGKKKLSAEKLPIIARVLGVEINALFFD

Nucleotide


Download         Length: 204 bp        

>NTDB_id=149879 B34_RS06310 WP_080624077.1 1142867..1143070(-) (comR/comR2) [Bacillus licheniformis strain SCDB 34]
TTGAAAAATGTCCTAGGACTACGCATTAAAGAGCTAAGAAAAGAAAAAGGTCTTACTCAATTTTATCTTGCAGGTGAATT
GGGATATAAACATTCTTCTATTATCAGTGAAATTGAAGCAGGTAAGAAAAAGCTTAGTGCTGAAAAGCTTCCCATCATTG
CAAGAGTCTTAGGTGTAGAAATAAATGCGCTTTTTTTTGATTAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_19)

(8-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

38.462

97.015

0.373