Detailed information NTG0149804

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IYO_RS24925
• Genome accession: NZ_CP011972
• Coordinates: 5519777..5521117 (+)
• Length: 446 a.a.
• NCBI ID: WP_017683544.1
• Uniprot ID: A0AAN4QBI6
• Organism: Pseudomonas syringae pv. actinidiae ICMP 18884
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5514777..5526117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IYO_RS24900 (IYO_024915)	pgeF	5514961..5515689 (-)	729	WP_017683543.1	peptidoglycan editing factor PgeF	-
IYO_RS24905 (IYO_024920)	rluD	5515686..5516648 (-)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
IYO_RS24910 (IYO_024925)	-	5516798..5517820 (+)	1023	WP_003381267.1	outer membrane protein assembly factor BamD	-
IYO_RS24915 (IYO_024930)	-	5517950..5518189 (+)	240	WP_057403016.1	PP0621 family protein	-
IYO_RS24920 (IYO_024935)	pilS	5518179..5519774 (+)	1596	WP_003381271.1	ATP-binding protein	Regulator
IYO_RS24925 (IYO_024940)	pilR	5519777..5521117 (+)	1341	WP_017683544.1	sigma-54 dependent transcriptional regulator	Regulator
IYO_RS24930 (IYO_024945)	-	5521578..5522195 (+)	618	WP_003381275.1	TetR/AcrR family transcriptional regulator	-
IYO_RS24935 (IYO_024950)	-	5522277..5523392 (+)	1116	WP_017683545.1	efflux RND transporter periplasmic adaptor subunit	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49937.04 Da
• Isoelectric Point: 6.8233

>NTDB_id=149804 IYO_RS24925 WP_017683544.1 5519777..5521117(+) (pilR) [Pseudomonas syringae pv. actinidiae ICMP 18884]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNGAQPVARVHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=149804 IYO_RS24925 WP_017683544.1 5519777..5521117(+) (pilR) [Pseudomonas syringae pv. actinidiae ICMP 18884]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAGCTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGACTTTGTGACCAAACCGGT
AGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACCCAACCGGTACGCAGCATCGACA
GCCGGCTGCTGGGCGACTCACCGCCGATGCGTACCTTGCGTAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAAGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCATCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCGGGCCTATTCCAGGCGGCACACAACGGGACACTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAGAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAGGACCTGT
ATTACCGGCTTAACGTGATCGAACTGCGTGTGCCTTCATTGCGCGAGCGGCGTGAAGATATCGATCAGATTGCAGCCAGC
GTTTTGCGACGGCTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCGTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGCTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	99.327	0.774
pilR	Acinetobacter baumannii strain A118	48.261	100	0.498