Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   A1R12_RS18570 Genome accession   NZ_CP014783
Coordinates   3842450..3843139 (-) Length   229 a.a.
NCBI ID   WP_015418564.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3837450..3848139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS18550 (A1R12_18550) - 3838355..3838702 (-) 348 WP_004393256.1 YxeA family protein -
  A1R12_RS18555 (A1R12_18555) yxdM 3838716..3840584 (-) 1869 WP_031379169.1 ABC transporter permease YxdM -
  A1R12_RS18560 (A1R12_18560) yxdL 3840559..3841332 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  A1R12_RS18565 (A1R12_18565) yxdK 3841476..3842453 (-) 978 WP_015418563.1 two-component system sensor histidine kinase YxdK -
  A1R12_RS18570 (A1R12_18570) braR 3842450..3843139 (-) 690 WP_015418564.1 two-component system response regulator YxdJ Regulator
  A1R12_RS18575 (A1R12_18575) - 3843289..3844728 (-) 1440 WP_015418565.1 sensor histidine kinase -
  A1R12_RS18580 (A1R12_18580) - 3844725..3845447 (-) 723 WP_015418566.1 response regulator transcription factor -
  A1R12_RS18585 (A1R12_18585) - 3845669..3846580 (+) 912 WP_060673796.1 ABC transporter ATP-binding protein -
  A1R12_RS18590 (A1R12_18590) - 3846577..3847335 (+) 759 WP_012118838.1 ABC transporter permease -
  A1R12_RS18595 (A1R12_18595) - 3847353..3848087 (+) 735 WP_012118839.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26531.23 Da        Isoelectric Point: 4.8514

>NTDB_id=149742 A1R12_RS18570 WP_015418564.1 3842450..3843139(-) (braR) [Bacillus amyloliquefaciens strain B15]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAADDFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGAYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=149742 A1R12_RS18570 WP_015418564.1 3842450..3843139(-) (braR) [Bacillus amyloliquefaciens strain B15]
ATGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGATGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTTGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCACTCCACAAGCCCGATCATTTTTATCTCTGCC
AGAAGCGGGGAAATGGATCAAGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTACGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGCGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393