Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   A1R12_RS17195 Genome accession   NZ_CP014783
Coordinates   3571147..3572277 (-) Length   376 a.a.
NCBI ID   WP_061860948.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3566147..3577277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS17165 (A1R12_17165) - 3566992..3567396 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  A1R12_RS17170 (A1R12_17170) ureC 3567537..3569246 (-) 1710 WP_031379249.1 urease subunit alpha -
  A1R12_RS17175 (A1R12_17175) ureB 3569243..3569617 (-) 375 WP_012118652.1 urease subunit beta -
  A1R12_RS17180 (A1R12_17180) ureA 3569614..3569931 (-) 318 WP_007407581.1 urease subunit gamma -
  A1R12_RS17185 (A1R12_17185) - 3570285..3570473 (-) 189 WP_015418407.1 CsbD family protein -
  A1R12_RS17190 (A1R12_17190) - 3570547..3571026 (-) 480 WP_061860947.1 hypothetical protein -
  A1R12_RS17195 (A1R12_17195) rapC 3571147..3572277 (-) 1131 WP_061860948.1 tetratricopeptide repeat protein Regulator
  A1R12_RS17200 (A1R12_17200) moaA 3572468..3573493 (-) 1026 WP_012118655.1 GTP 3',8-cyclase MoaA -
  A1R12_RS17205 (A1R12_17205) fdhD 3573511..3574299 (-) 789 WP_017418742.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  A1R12_RS20350 - 3574394..3574558 (-) 165 WP_007407587.1 hypothetical protein -
  A1R12_RS17210 (A1R12_17210) - 3574644..3575324 (-) 681 WP_039253514.1 VWA domain-containing protein -
  A1R12_RS17215 (A1R12_17215) - 3575633..3576319 (-) 687 WP_015418411.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44918.03 Da        Isoelectric Point: 5.3221

>NTDB_id=149737 A1R12_RS17195 WP_061860948.1 3571147..3572277(-) (rapC) [Bacillus amyloliquefaciens strain B15]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYAEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=149737 A1R12_RS17195 WP_061860948.1 3571147..3572277(-) (rapC) [Bacillus amyloliquefaciens strain B15]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ACGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAAGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATGCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(192-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399