Detailed information NTG0149720

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: A1R12_RS15000
• Genome accession: NZ_CP014783
• Coordinates: 3122200..3123330 (-)
• Length: 376 a.a.
• NCBI ID: WP_031378390.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain B15
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3117200..3128330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A1R12_RS14980 (A1R12_14980)	-	3117297..3118148 (-)	852	WP_015418145.1	DUF72 domain-containing protein	-
A1R12_RS14985 (A1R12_14985)	-	3118175..3118528 (-)	354	WP_031378393.1	hypothetical protein	-
A1R12_RS14990 (A1R12_14990)	-	3118601..3119965 (-)	1365	WP_061890800.1	allantoinase	-
A1R12_RS14995 (A1R12_14995)	-	3120149..3121744 (+)	1596	WP_061890801.1	PucR family transcriptional regulator	-
A1R12_RS15000 (A1R12_15000)	rapC	3122200..3123330 (-)	1131	WP_031378390.1	tetratricopeptide repeat protein	Regulator
A1R12_RS20535 (A1R12_15005)	-	3123460..3123639 (-)	180	WP_007410112.1	hypothetical protein	-
A1R12_RS15010 (A1R12_15010)	-	3123765..3124898 (-)	1134	WP_061890802.1	hypothetical protein	-
A1R12_RS15015 (A1R12_15015)	-	3124955..3126151 (-)	1197	WP_031378388.1	MFS transporter	-
A1R12_RS15020 (A1R12_15020)	-	3126273..3127484 (-)	1212	WP_197985421.1	pyridoxal-phosphate-dependent aminotransferase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44308.62 Da
• Isoelectric Point: 6.1972

>NTDB_id=149720 A1R12_RS15000 WP_031378390.1 3122200..3123330(-) (rapC) [Bacillus amyloliquefaciens strain B15]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVVSGNYVDFKSYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYNKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQIGIKQT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=149720 A1R12_RS15000 WP_031378390.1 3122200..3123330(-) (rapC) [Bacillus amyloliquefaciens strain B15]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCGTATCAGG
GAACTATGTAGACTTTAAAAGTTATGAAAAAAGCTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAATAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATAGGAATCAAACAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (194-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.327	100	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	40.369	100	0.407