Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B8809_RS09335 Genome accession   NZ_CP011964
Coordinates   2206187..2208058 (-) Length   623 a.a.
NCBI ID   WP_058062803.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum strain NCIMB8809     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2195570..2243177 2206187..2208058 within 0


Gene organization within MGE regions


Location: 2195570..2243177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B8809_RS09290 (B8809_1770) metG 2196499..2198364 (-) 1866 WP_007054114.1 methionine--tRNA ligase -
  B8809_RS09300 (B8809_1771) - 2198681..2199328 (+) 648 WP_007052934.1 hypothetical protein -
  B8809_RS11125 - 2199469..2199696 (+) 228 WP_015512101.1 hypothetical protein -
  B8809_RS09310 (B8809_1772) rsmI 2199723..2200733 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B8809_RS09320 (B8809_1773) - 2201430..2202848 (-) 1419 WP_041080942.1 MFS transporter -
  B8809_RS09325 (B8809_1774) - 2202930..2203976 (+) 1047 WP_058062801.1 FAD:protein FMN transferase -
  B8809_RS09330 (B8809_1775) rcrQ 2204129..2205967 (-) 1839 WP_058062802.1 ABC transporter ATP-binding protein Regulator
  B8809_RS09335 (B8809_1776) rcrP 2206187..2208058 (-) 1872 WP_058062803.1 ABC transporter ATP-binding protein Regulator
  B8809_RS09340 (B8809_1777) - 2208245..2208766 (-) 522 WP_041473941.1 MarR family transcriptional regulator -
  B8809_RS09345 (B8809_1778) - 2209128..2209691 (+) 564 WP_021975086.1 BRO family protein -
  B8809_RS09350 (B8809_1779) - 2210177..2214013 (-) 3837 WP_058062804.1 bacterial Ig-like domain-containing protein -
  B8809_RS09355 (B8809_1780) - 2214225..2218766 (-) 4542 WP_058062805.1 exo-beta-1,6-galactobiohydrolase -
  B8809_RS09360 (B8809_1781) - 2219070..2220566 (-) 1497 WP_007052945.1 RNA-binding domain-containing protein -
  B8809_RS09365 (B8809_1782) - 2220906..2222429 (-) 1524 WP_013583003.1 amino acid permease -
  B8809_RS09370 (B8809_1783) - 2222617..2226300 (-) 3684 WP_058062806.1 FtsX-like permease family protein -
  B8809_RS09375 (B8809_1784) - 2226389..2227090 (-) 702 WP_013141473.1 ABC transporter ATP-binding protein -
  B8809_RS09380 (B8809_1785) - 2227234..2227803 (+) 570 WP_007052949.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  B8809_RS09385 (B8809_1786) - 2228025..2229506 (+) 1482 WP_058062807.1 amino acid permease -
  B8809_RS09390 (B8809_1787) - 2229569..2230981 (-) 1413 WP_058062808.1 ATP-binding protein -
  B8809_RS09395 (B8809_1788) - 2231123..2231398 (-) 276 Protein_1842 transposase -
  B8809_RS09400 (B8809_1789) - 2231379..2232440 (+) 1062 WP_256868749.1 ISL3 family transposase -
  B8809_RS09405 (B8809_1790) - 2232566..2235763 (-) 3198 WP_044580571.1 alpha-L-arabinofuranosidase -
  B8809_RS09410 (B8809_1791) - 2236098..2236703 (-) 606 WP_007056973.1 YesL family protein -
  B8809_RS09415 (B8809_1792) - 2236909..2237751 (-) 843 WP_007056144.1 carbohydrate ABC transporter permease -
  B8809_RS09420 (B8809_1793) - 2237751..2238605 (-) 855 WP_007052964.1 sugar ABC transporter permease -
  B8809_RS09425 (B8809_1794) - 2238988..2240004 (+) 1017 WP_007054086.1 LacI family DNA-binding transcriptional regulator -
  B8809_RS09430 (B8809_1795) - 2240260..2241606 (-) 1347 WP_007052967.1 ABC transporter substrate-binding protein -
  B8809_RS09435 (B8809_1796) - 2241995..2242708 (-) 714 WP_007056137.1 histidine phosphatase family protein -
  B8809_RS09440 (B8809_1797) - 2242800..2243177 (+) 378 WP_007052969.1 DUF4235 domain-containing protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68018.60 Da        Isoelectric Point: 5.4567

>NTDB_id=149720 B8809_RS09335 WP_058062803.1 2206187..2208058(-) (rcrP) [Bifidobacterium longum subsp. longum strain NCIMB8809]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGTYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
QIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGKAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=149720 B8809_RS09335 WP_058062803.1 2206187..2208058(-) (rcrP) [Bifidobacterium longum subsp. longum strain NCIMB8809]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATCGCCGATTATGGCAGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGAATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGTGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTTGCCGTCTACTGGATCGGTACCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTACTCGACACCGAG
CAGATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGTCAGCGAGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.183

100

0.49

Multiple sequence alignment