Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B8809_RS09330 Genome accession   NZ_CP011964
Coordinates   2204129..2205967 (-) Length   612 a.a.
NCBI ID   WP_058062802.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum strain NCIMB8809     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2195570..2243177 2204129..2205967 within 0


Gene organization within MGE regions


Location: 2195570..2243177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B8809_RS09290 (B8809_1770) metG 2196499..2198364 (-) 1866 WP_007054114.1 methionine--tRNA ligase -
  B8809_RS09300 (B8809_1771) - 2198681..2199328 (+) 648 WP_007052934.1 hypothetical protein -
  B8809_RS11125 - 2199469..2199696 (+) 228 WP_015512101.1 hypothetical protein -
  B8809_RS09310 (B8809_1772) rsmI 2199723..2200733 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B8809_RS09320 (B8809_1773) - 2201430..2202848 (-) 1419 WP_041080942.1 MFS transporter -
  B8809_RS09325 (B8809_1774) - 2202930..2203976 (+) 1047 WP_058062801.1 FAD:protein FMN transferase -
  B8809_RS09330 (B8809_1775) rcrQ 2204129..2205967 (-) 1839 WP_058062802.1 ABC transporter ATP-binding protein Regulator
  B8809_RS09335 (B8809_1776) rcrP 2206187..2208058 (-) 1872 WP_058062803.1 ABC transporter ATP-binding protein Regulator
  B8809_RS09340 (B8809_1777) - 2208245..2208766 (-) 522 WP_041473941.1 MarR family transcriptional regulator -
  B8809_RS09345 (B8809_1778) - 2209128..2209691 (+) 564 WP_021975086.1 BRO family protein -
  B8809_RS09350 (B8809_1779) - 2210177..2214013 (-) 3837 WP_058062804.1 bacterial Ig-like domain-containing protein -
  B8809_RS09355 (B8809_1780) - 2214225..2218766 (-) 4542 WP_058062805.1 exo-beta-1,6-galactobiohydrolase -
  B8809_RS09360 (B8809_1781) - 2219070..2220566 (-) 1497 WP_007052945.1 RNA-binding domain-containing protein -
  B8809_RS09365 (B8809_1782) - 2220906..2222429 (-) 1524 WP_013583003.1 amino acid permease -
  B8809_RS09370 (B8809_1783) - 2222617..2226300 (-) 3684 WP_058062806.1 FtsX-like permease family protein -
  B8809_RS09375 (B8809_1784) - 2226389..2227090 (-) 702 WP_013141473.1 ABC transporter ATP-binding protein -
  B8809_RS09380 (B8809_1785) - 2227234..2227803 (+) 570 WP_007052949.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  B8809_RS09385 (B8809_1786) - 2228025..2229506 (+) 1482 WP_058062807.1 amino acid permease -
  B8809_RS09390 (B8809_1787) - 2229569..2230981 (-) 1413 WP_058062808.1 ATP-binding protein -
  B8809_RS09395 (B8809_1788) - 2231123..2231398 (-) 276 Protein_1842 transposase -
  B8809_RS09400 (B8809_1789) - 2231379..2232440 (+) 1062 WP_256868749.1 ISL3 family transposase -
  B8809_RS09405 (B8809_1790) - 2232566..2235763 (-) 3198 WP_044580571.1 alpha-L-arabinofuranosidase -
  B8809_RS09410 (B8809_1791) - 2236098..2236703 (-) 606 WP_007056973.1 YesL family protein -
  B8809_RS09415 (B8809_1792) - 2236909..2237751 (-) 843 WP_007056144.1 carbohydrate ABC transporter permease -
  B8809_RS09420 (B8809_1793) - 2237751..2238605 (-) 855 WP_007052964.1 sugar ABC transporter permease -
  B8809_RS09425 (B8809_1794) - 2238988..2240004 (+) 1017 WP_007054086.1 LacI family DNA-binding transcriptional regulator -
  B8809_RS09430 (B8809_1795) - 2240260..2241606 (-) 1347 WP_007052967.1 ABC transporter substrate-binding protein -
  B8809_RS09435 (B8809_1796) - 2241995..2242708 (-) 714 WP_007056137.1 histidine phosphatase family protein -
  B8809_RS09440 (B8809_1797) - 2242800..2243177 (+) 378 WP_007052969.1 DUF4235 domain-containing protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67055.46 Da        Isoelectric Point: 5.9871

>NTDB_id=149719 B8809_RS09330 WP_058062802.1 2204129..2205967(-) (rcrQ) [Bifidobacterium longum subsp. longum strain NCIMB8809]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGKNYMGGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=149719 B8809_RS09330 WP_058062802.1 2204129..2205967(-) (rcrQ) [Bifidobacterium longum subsp. longum strain NCIMB8809]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAGCTCGTGAA
CTATTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAATCGATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGGCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTAGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGCCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATCCGCCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATTGTGGCGTTCATGATGTACATCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGCAGGCCCTACTCGGCAAGAACTACATGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTACGAGATTTCCGG
CGGTTCGATTGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGCACCGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGACGTACGAGC
TTTGTGATCGCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCACGACGAGCTGCTGGCGGCGGGCGGTTTTTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.571

96.078

0.515

Multiple sequence alignment