Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   A1R12_RS10790 Genome accession   NZ_CP014783
Coordinates   2267456..2268946 (-) Length   496 a.a.
NCBI ID   WP_060674346.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2262456..2273946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS10760 (A1R12_10760) gudB 2262521..2263795 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  A1R12_RS10765 (A1R12_10765) - 2263956..2264540 (-) 585 WP_003153412.1 genetic competence negative regulator -
  A1R12_RS10770 (A1R12_10770) - 2264692..2265480 (-) 789 WP_012117876.1 metallophosphoesterase -
  A1R12_RS10775 (A1R12_10775) - 2265567..2266025 (-) 459 WP_007409443.1 YpbF family protein -
  A1R12_RS10780 (A1R12_10780) - 2266094..2266876 (-) 783 WP_060674344.1 LysM peptidoglycan-binding domain-containing protein -
  A1R12_RS10785 (A1R12_10785) - 2266854..2267441 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  A1R12_RS10790 (A1R12_10790) recS 2267456..2268946 (-) 1491 WP_060674346.1 RecQ family ATP-dependent DNA helicase Machinery gene
  A1R12_RS10795 (A1R12_10795) - 2268939..2269997 (-) 1059 WP_060674349.1 helix-turn-helix domain-containing protein -
  A1R12_RS10800 (A1R12_10800) - 2270266..2270514 (+) 249 WP_003153403.1 ferredoxin -
  A1R12_RS10805 (A1R12_10805) - 2270656..2271228 (-) 573 WP_015417737.1 ECF transporter S component -
  A1R12_RS10810 (A1R12_10810) serA 2271717..2273294 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56075.15 Da        Isoelectric Point: 6.2476

>NTDB_id=149682 A1R12_RS10790 WP_060674346.1 2267456..2268946(-) (recS) [Bacillus amyloliquefaciens strain B15]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNTEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDCQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=149682 A1R12_RS10790 WP_060674346.1 2267456..2268946(-) (recS) [Bacillus amyloliquefaciens strain B15]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAACATTCTCCTGGCGGCAGAACATTTGGCTGATAATA
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGAGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATTGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683