Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   A1R12_RS06980 Genome accession   NZ_CP014783
Coordinates   1367536..1368132 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   A7Z437
Organism   Bacillus amyloliquefaciens strain B15     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362536..1373132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS06950 (A1R12_06950) - 1362749..1363204 (+) 456 WP_060675292.1 flavodoxin -
  A1R12_RS06955 (A1R12_06955) dapD 1363286..1363996 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  A1R12_RS06960 (A1R12_06960) - 1364067..1365191 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  A1R12_RS06965 (A1R12_06965) - 1365252..1365497 (+) 246 WP_003154596.1 YkuS family protein -
  A1R12_RS06970 (A1R12_06970) - 1365531..1366337 (-) 807 WP_061890571.1 mechanosensitive ion channel family protein -
  A1R12_RS06975 (A1R12_06975) - 1366626..1367084 (+) 459 WP_061890572.1 TlpA disulfide reductase family protein -
  A1R12_RS06980 (A1R12_06980) rok 1367536..1368132 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  A1R12_RS06985 (A1R12_06985) - 1368153..1369145 (-) 993 WP_012117448.1 hypothetical protein -
  A1R12_RS06990 (A1R12_06990) - 1369291..1369893 (+) 603 WP_015239766.1 molybdenum cofactor guanylyltransferase -
  A1R12_RS06995 (A1R12_06995) - 1369945..1370964 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  A1R12_RS07000 (A1R12_07000) glp 1370982..1372274 (+) 1293 WP_061890573.1 gephyrin-like molybdotransferase Glp -
  A1R12_RS07005 (A1R12_07005) mobB 1372235..1372756 (+) 522 WP_015417376.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=149657 A1R12_RS06980 WP_012117447.1 1367536..1368132(+) (rok) [Bacillus amyloliquefaciens strain B15]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=149657 A1R12_RS06980 WP_012117447.1 1367536..1368132(+) (rok) [Bacillus amyloliquefaciens strain B15]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z437

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843