Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACU16_RS16805 Genome accession   NZ_CP011958
Coordinates   3889076..3890470 (+) Length   464 a.a.
NCBI ID   WP_024711611.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain CFBP7331     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3884076..3895470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACU16_RS24305 - 3884437..3884655 (-) 219 Protein_3305 hypothetical protein -
  ACU16_RS16790 (ACU16_16805) sucD 3884829..3885704 (-) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  ACU16_RS16795 (ACU16_16810) sucC 3885729..3886898 (-) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  ACU16_RS16800 (ACU16_16815) - 3887132..3888745 (+) 1614 WP_014504316.1 HAMP domain-containing sensor histidine kinase -
  ACU16_RS16805 (ACU16_16820) pilR 3889076..3890470 (+) 1395 WP_024711611.1 sigma-54 dependent transcriptional regulator Regulator
  ACU16_RS24310 - 3890543..3890749 (+) 207 WP_082348324.1 YhfG family protein -
  ACU16_RS24315 - 3890811..3891320 (+) 510 WP_179208360.1 Fic family protein -
  ACU16_RS16815 (ACU16_16830) pilB 3891329..3893062 (-) 1734 WP_024711610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACU16_RS16820 (ACU16_16835) - 3893097..3894623 (-) 1527 WP_024711609.1 membrane protein -
  ACU16_RS16825 (ACU16_16840) - 3894593..3895222 (-) 630 WP_024711608.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50201.60 Da        Isoelectric Point: 6.3803

>NTDB_id=149640 ACU16_RS16805 WP_024711611.1 3889076..3890470(+) (pilR) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGELVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=149640 ACU16_RS16805 WP_024711611.1 3889076..3890470(+) (pilR) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAGCTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment