Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   A1R12_RS03830 Genome accession   NZ_CP014783
Coordinates   768044..768760 (+) Length   238 a.a.
NCBI ID   WP_061890492.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 763044..773760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS03800 (A1R12_03800) - 763224..763601 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  A1R12_RS03805 (A1R12_03805) - 763611..764042 (-) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  A1R12_RS03810 (A1R12_03810) - 764058..764300 (-) 243 WP_003155595.1 spore germination protein -
  A1R12_RS03815 (A1R12_03815) - 764315..764575 (-) 261 WP_014417185.1 spore germination protein -
  A1R12_RS03820 (A1R12_03820) treP 764846..766261 (+) 1416 WP_061890490.1 PTS system trehalose-specific EIIBC component -
  A1R12_RS03825 (A1R12_03825) treC 766337..768022 (+) 1686 WP_061890491.1 alpha,alpha-phosphotrehalase -
  A1R12_RS03830 (A1R12_03830) treR 768044..768760 (+) 717 WP_061890492.1 trehalose operon repressor Regulator
  A1R12_RS03835 (A1R12_03835) - 768893..769558 (+) 666 WP_061890493.1 NAD(P)H-dependent oxidoreductase -
  A1R12_RS03840 (A1R12_03840) - 769594..770355 (-) 762 WP_047935447.1 YibE/F family protein -
  A1R12_RS03845 (A1R12_03845) - 770352..771491 (-) 1140 WP_053573585.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27497.54 Da        Isoelectric Point: 7.8935

>NTDB_id=149627 A1R12_RS03830 WP_061890492.1 768044..768760(+) (treR) [Bacillus amyloliquefaciens strain B15]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLKKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=149627 A1R12_RS03830 WP_061890492.1 768044..768760(+) (treR) [Bacillus amyloliquefaciens strain B15]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTATTGAAGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42