Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   A1R12_RS00315 Genome accession   NZ_CP014783
Coordinates   60795..61025 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain B15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55795..66025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS00285 (A1R12_00285) ridA 55983..56363 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  A1R12_RS00290 (A1R12_00290) spoVG 56571..56852 (+) 282 WP_269195031.1 septation regulator SpoVG -
  A1R12_RS00295 (A1R12_00295) glmU 57044..58414 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  A1R12_RS00300 (A1R12_00300) - 58436..59389 (+) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  A1R12_RS00305 (A1R12_00305) - 59474..60082 (+) 609 WP_014416724.1 50S ribosomal protein L25/general stress protein Ctc -
  A1R12_RS00310 (A1R12_00310) pth 60167..60733 (+) 567 WP_060675317.1 aminoacyl-tRNA hydrolase -
  A1R12_RS00315 (A1R12_00315) subA/fin 60795..61025 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  A1R12_RS00320 (A1R12_00320) mfd 61095..64628 (+) 3534 WP_060675316.1 transcription-repair coupling factor -
  A1R12_RS00325 (A1R12_00325) spoVT 64765..65301 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=149606 A1R12_RS00315 WP_004264650.1 60795..61025(+) (subA/fin) [Bacillus amyloliquefaciens strain B15]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=149606 A1R12_RS00315 WP_004264650.1 60795..61025(+) (subA/fin) [Bacillus amyloliquefaciens strain B15]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAATCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868