Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   AB684_RS17940 Genome accession   NZ_CP014781
Coordinates   3473146..3475476 (-) Length   776 a.a.
NCBI ID   WP_017474581.1    Uniprot ID   -
Organism   Bacillus licheniformis strain HRBL-15TDI7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3468146..3480476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB684_RS17920 (AB684_17920) - 3469470..3470309 (-) 840 WP_003185195.1 aldo/keto reductase -
  AB684_RS17925 (AB684_17925) - 3470399..3471259 (-) 861 WP_003185197.1 ROK family protein -
  AB684_RS22335 - 3471316..3471462 (+) 147 WP_155721003.1 hypothetical protein -
  AB684_RS17930 (AB684_17930) - 3471526..3472650 (+) 1125 WP_011198281.1 aminotransferase class V-fold PLP-dependent enzyme -
  AB684_RS17935 (AB684_17935) - 3472730..3473140 (+) 411 WP_017474582.1 DUF5412 domain-containing protein -
  AB684_RS17940 (AB684_17940) helD 3473146..3475476 (-) 2331 WP_017474581.1 RNA polymerase recycling motor HelD Machinery gene
  AB684_RS17945 (AB684_17945) - 3475655..3476263 (-) 609 WP_003185205.1 trimeric intracellular cation channel family protein -
  AB684_RS17950 (AB684_17950) - 3476388..3476872 (+) 485 Protein_3573 GrpB family protein -
  AB684_RS17955 (AB684_17955) - 3477011..3477496 (-) 486 WP_003185209.1 GNAT family N-acetyltransferase -
  AB684_RS17960 (AB684_17960) - 3477603..3478016 (-) 414 WP_003185211.1 disulfide oxidoreductase -
  AB684_RS17965 (AB684_17965) - 3478006..3478701 (-) 696 WP_003185213.1 DsbA family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 89956.75 Da        Isoelectric Point: 6.9676

>NTDB_id=149579 AB684_RS17940 WP_017474581.1 3473146..3475476(-) (helD) [Bacillus licheniformis strain HRBL-15TDI7]
MQENGQEWLEEEKRIRLVLKELDQKLHSLKGKTGGLKEDIIDLRKHFWSDVTVNIADENEAVETFFSIKQQAEVLAERER
SHKQFYSQLKNLLKVKESPYFGRVDFLEDGEENAESVYIGLASLMYEKEERFLIYDWRAPISSLFYNYGPGAAQYEVPDE
TVRGTIELKRQFLFKNGQLKAMFNTDMAIGDEVLQEVLGQQADIQMKSIVATIQKEQNQIIRNEKSRFLIVRGAAGSGKT
SAALQRAAYLLYRGRGQIESSQMLLFSPNLLFNSYVANVLPELGEENIQQTTFQEFVARRLGKQVPCETPFDQLEYCLTA
SDGEEQRIRMKSIELKSSLAFKGIIDDYVKYLAKGHLVFKHITFRGKRIITSGQMRKFFAALDHSDTLSNRIEQTGKWLL
QLLNKYERQERKKDWVIEESELLDKEEYLKAYKRLQEEQRFTENTFDDYERERNLLASIVAEREFKPLKQAVKAFGFIDF
KGTYLQLFSGRYTPQTRPDDWQSICTFTQKSFRFEKLLYEDAVPFLYMKNKLKGGGKNTAIRHLFIDEAQDYTPFQLAFL
ESLFPACSITMLGDLNQAILAHAYHDKTLLSGGVFEGEKTEIITLKRSYRSTKEIVELTKRIIEGGEEIEAFNRNGKKPT
LTISADPHAHHKEMASLMTALQKEGLETIAVICKTVRECRDAFQHLQQHAELKLIDKETRTFQKGVVVIPVYLAKGIEFD
AVIIYDASEKQYKKERERTLFYTACTRAMHELHLFSIGKETHFLNGVPNDMYTRRE

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=149579 AB684_RS17940 WP_017474581.1 3473146..3475476(-) (helD) [Bacillus licheniformis strain HRBL-15TDI7]
GTGCAGGAAAACGGTCAGGAATGGCTGGAAGAGGAAAAACGAATCCGGCTTGTTTTAAAGGAATTGGATCAAAAGCTTCA
TTCTCTAAAGGGAAAAACCGGCGGATTGAAGGAGGATATCATCGATTTACGGAAACATTTTTGGAGCGATGTCACCGTAA
ACATAGCCGATGAAAATGAAGCGGTTGAAACATTTTTTAGCATTAAACAGCAGGCTGAGGTTTTGGCTGAGAGGGAAAGG
AGCCATAAGCAGTTTTACAGCCAGCTGAAAAACCTGTTAAAAGTGAAAGAATCGCCTTATTTCGGCCGCGTAGATTTTTT
GGAGGACGGCGAAGAAAACGCTGAGTCCGTCTACATCGGACTCGCCTCTTTAATGTATGAAAAAGAAGAGCGGTTTTTGA
TCTATGATTGGAGAGCGCCGATTTCCAGTCTGTTCTATAACTATGGACCCGGCGCGGCTCAATACGAAGTTCCGGACGAG
ACGGTCAGGGGAACGATTGAGCTGAAAAGGCAATTTCTCTTCAAAAACGGACAGCTGAAAGCGATGTTTAATACGGATAT
GGCGATTGGGGATGAAGTCCTTCAGGAAGTGCTGGGGCAGCAGGCCGATATCCAGATGAAAAGCATCGTCGCCACGATTC
AAAAAGAACAGAATCAGATCATTCGGAACGAAAAGAGCCGCTTTTTAATTGTTCGGGGAGCGGCTGGCAGCGGAAAAACG
TCGGCGGCATTGCAGCGGGCCGCATATTTGCTGTACCGCGGCCGCGGGCAGATCGAGTCGAGCCAGATGCTGCTATTCTC
TCCAAACCTGCTTTTTAACAGCTATGTCGCCAATGTTCTGCCTGAGCTCGGAGAGGAAAACATCCAGCAGACGACGTTCC
AGGAATTTGTAGCGCGCCGCCTTGGAAAGCAGGTACCATGCGAGACTCCGTTCGATCAGCTCGAATATTGTTTAACCGCT
TCAGACGGTGAGGAGCAGCGCATCCGGATGAAATCGATTGAATTGAAATCCAGTCTGGCTTTCAAAGGCATCATCGATGA
TTACGTCAAATATTTGGCAAAAGGGCACCTGGTGTTTAAACATATCACCTTTCGCGGAAAAAGGATCATCACAAGCGGTC
AGATGCGGAAATTTTTCGCGGCCCTTGATCATTCAGACACGCTGTCCAACCGGATTGAACAAACGGGAAAATGGCTGTTG
CAGCTCCTGAACAAATATGAACGCCAGGAAAGAAAAAAAGACTGGGTCATCGAAGAAAGCGAGCTGCTGGATAAAGAGGA
ATACTTAAAGGCTTATAAACGTCTTCAGGAGGAACAGCGCTTTACGGAGAATACGTTTGACGATTATGAAAGGGAGCGAA
ACCTCCTTGCCTCCATCGTTGCCGAAAGGGAGTTCAAGCCGCTCAAGCAAGCGGTAAAAGCGTTCGGCTTTATTGATTTT
AAAGGAACATACCTTCAGCTTTTTTCCGGACGCTATACCCCGCAAACGCGCCCTGATGACTGGCAGAGCATTTGCACATT
CACTCAGAAAAGCTTTCGTTTTGAGAAGCTGCTTTATGAAGATGCCGTCCCTTTTTTATATATGAAAAACAAGCTGAAAG
GCGGGGGGAAAAACACGGCAATCCGCCATTTATTCATTGATGAAGCCCAGGATTACACGCCTTTTCAACTTGCTTTTTTG
GAGAGCTTGTTTCCCGCGTGCAGCATCACGATGCTGGGAGACTTAAACCAGGCGATTCTTGCCCATGCCTATCACGATAA
GACGCTTCTGTCGGGAGGCGTGTTTGAAGGCGAAAAAACGGAGATCATCACCTTGAAGCGCAGCTACAGGTCGACGAAAG
AAATTGTTGAATTGACAAAGCGCATCATCGAAGGGGGCGAAGAGATCGAAGCTTTTAACAGGAACGGCAAAAAACCGACT
TTGACAATATCAGCCGATCCTCATGCACACCATAAAGAGATGGCTTCCCTTATGACCGCCCTTCAAAAAGAAGGACTTGA
GACGATTGCAGTCATCTGTAAAACAGTCCGGGAATGCAGGGATGCGTTCCAGCATCTTCAGCAGCATGCAGAGCTTAAAC
TGATCGATAAAGAAACGAGAACGTTTCAAAAAGGCGTGGTCGTCATTCCCGTCTATTTGGCGAAAGGGATCGAATTTGAT
GCCGTCATCATTTATGACGCTTCTGAAAAGCAATACAAAAAGGAAAGAGAGCGGACTTTATTTTATACGGCGTGCACGAG
GGCGATGCATGAGCTGCACCTCTTTTCCATTGGAAAAGAAACGCATTTTTTAAACGGCGTCCCAAATGATATGTACACGA
GAAGAGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(706-754)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

56.477

99.485

0.562