Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB684_RS11810 Genome accession   NZ_CP014781
Coordinates   2310751..2311233 (-) Length   160 a.a.
NCBI ID   WP_017474520.1    Uniprot ID   -
Organism   Bacillus licheniformis strain HRBL-15TDI7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2305751..2316233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB684_RS11780 (AB684_11780) - 2305855..2306241 (+) 387 WP_017474514.1 hypothetical protein -
  AB684_RS11785 (AB684_11785) - 2306260..2306541 (+) 282 WP_017474515.1 phage holin -
  AB684_RS11790 (AB684_11790) - 2306559..2306861 (+) 303 WP_017474516.1 hypothetical protein -
  AB684_RS22790 - 2307094..2307150 (+) 57 WP_231105306.1 putative holin-like toxin -
  AB684_RS22925 - 2307586..2307714 (-) 129 WP_016885998.1 hypothetical protein -
  AB684_RS11795 (AB684_11795) - 2307711..2308817 (-) 1107 WP_017474517.1 tetratricopeptide repeat protein -
  AB684_RS11800 (AB684_11800) - 2308928..2310187 (-) 1260 WP_017474518.1 MFS transporter -
  AB684_RS11805 (AB684_11805) - 2310329..2310682 (-) 354 WP_017474519.1 hypothetical protein -
  AB684_RS11810 (AB684_11810) rok 2310751..2311233 (-) 483 WP_017474520.1 hypothetical protein Regulator
  AB684_RS11815 (AB684_11815) - 2311358..2311933 (-) 576 WP_017474521.1 SMI1/KNR4 family protein -
  AB684_RS11820 (AB684_11820) - 2312023..2312487 (-) 465 WP_017474522.1 SMI1/KNR4 family protein -
  AB684_RS11825 (AB684_11825) - 2312607..2313044 (-) 438 WP_026080827.1 SMI1/KNR4 family protein -
  AB684_RS11830 (AB684_11830) - 2313051..2314955 (-) 1905 WP_061876376.1 ribonuclease YeeF family protein -
  AB684_RS11835 (AB684_11835) - 2315114..2315668 (-) 555 WP_017474525.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18339.06 Da        Isoelectric Point: 10.5108

>NTDB_id=149533 AB684_RS11810 WP_017474520.1 2310751..2311233(-) (rok) [Bacillus licheniformis strain HRBL-15TDI7]
MFNEREALRLRLEQLNDKEIIVIRELREEREGIYSKLRELDKKQSNPPQAKESTSLMDLVSAASQKLKQSKSSSPHIQTN
TASQAFNKSITSTQREAALKILNIHKEGIRGASLRNEIEKETGMKVKNMTAFMSGLMKHHPEVKKPGRGHYIIKHEKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=149533 AB684_RS11810 WP_017474520.1 2310751..2311233(-) (rok) [Bacillus licheniformis strain HRBL-15TDI7]
ATGTTTAATGAGCGAGAGGCTTTACGCTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTAATACGAGAACTTAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGTGAGTTGGACAAAAAACAGAGTAACCCTCCTCAAGCCAAAGAAAGCA
CTTCATTGATGGATTTAGTTAGCGCAGCATCCCAAAAATTGAAACAGTCTAAAAGCTCATCTCCGCACATTCAGACAAAC
ACTGCCTCGCAAGCCTTTAATAAGTCTATAACATCTACACAGCGTGAAGCAGCACTTAAAATATTGAATATACATAAAGA
AGGCATTAGAGGGGCAAGCCTTCGCAACGAGATTGAAAAAGAAACAGGCATGAAAGTTAAAAATATGACAGCTTTTATGA
GCGGGCTCATGAAACACCATCCTGAAGTAAAGAAGCCAGGACGCGGTCATTACATTATTAAGCATGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.077

100

0.481

Multiple sequence alignment