Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AB684_RS09650 Genome accession   NZ_CP014781
Coordinates   1913655..1914026 (+) Length   123 a.a.
NCBI ID   WP_017474791.1    Uniprot ID   -
Organism   Bacillus licheniformis strain HRBL-15TDI7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1908655..1919026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB684_RS09620 (AB684_09620) - 1909083..1909316 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  AB684_RS09625 (AB684_09625) recP/tkt 1909483..1911486 (+) 2004 WP_009328229.1 transketolase Machinery gene
  AB684_RS09630 (AB684_09630) sirA 1911641..1912078 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  AB684_RS09635 (AB684_09635) - 1912163..1912381 (+) 219 WP_003182236.1 YneF family protein -
  AB684_RS09640 (AB684_09640) - 1912462..1912623 (-) 162 WP_229107189.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AB684_RS09645 (AB684_09645) - 1912866..1913573 (+) 708 WP_003182240.1 cytochrome c biogenesis protein CcdA -
  AB684_RS09650 (AB684_09650) pilH 1913655..1914026 (+) 372 WP_017474791.1 response regulator Machinery gene
  AB684_RS09655 (AB684_09655) - 1914100..1914594 (+) 495 WP_085959522.1 CcdC family protein -
  AB684_RS09660 (AB684_09660) - 1914630..1915058 (-) 429 WP_003182245.1 DUF2621 domain-containing protein -
  AB684_RS09665 (AB684_09665) - 1915263..1915670 (-) 408 WP_017474790.1 Hsp20/alpha crystallin family protein -
  AB684_RS09670 (AB684_09670) - 1915806..1915952 (-) 147 WP_003182250.1 small acid-soluble spore protein P -
  AB684_RS09675 (AB684_09675) sspO 1915994..1916140 (-) 147 WP_003182252.1 small acid-soluble spore protein O -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13981.50 Da        Isoelectric Point: 4.5739

>NTDB_id=149528 AB684_RS09650 WP_017474791.1 1913655..1914026(+) (pilH) [Bacillus licheniformis strain HRBL-15TDI7]
MTRVLIVDDAKFMRDKIREILETEDLQVAGEAENGEEAVLLYQELQPDLVIMDITMPVKNGIEALKDMIQLNPKVKVIMC
TAMRQKWIVVEVIEAGAKDFIVKPFEETKVVEAIRHVLGNACR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=149528 AB684_RS09650 WP_017474791.1 1913655..1914026(+) (pilH) [Bacillus licheniformis strain HRBL-15TDI7]
ATGACAAGGGTTTTAATTGTTGATGATGCAAAATTTATGAGAGATAAAATTAGAGAAATACTTGAAACAGAAGACTTGCA
AGTCGCGGGTGAAGCCGAGAACGGGGAAGAAGCTGTTTTGCTTTATCAAGAGCTGCAGCCGGACTTGGTTATCATGGATA
TTACGATGCCTGTGAAAAACGGGATAGAAGCTTTAAAGGATATGATCCAGCTGAACCCGAAAGTGAAAGTGATCATGTGT
ACGGCCATGCGGCAAAAGTGGATCGTCGTTGAGGTGATCGAAGCCGGAGCCAAGGACTTCATCGTCAAGCCTTTCGAGGA
AACGAAAGTCGTCGAAGCGATTCGGCATGTGCTCGGAAATGCTTGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.585

100

0.366