Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB434_RS10460 Genome accession   NZ_CP011939
Coordinates   2219354..2221168 (+) Length   604 a.a.
NCBI ID   WP_035182049.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain S-lac     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214354..2226168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB434_RS10435 (AB434_2338) - 2215175..2216116 (+) 942 WP_014095728.1 ABC transporter ATP-binding protein -
  AB434_RS10440 (AB434_2340) spxA 2216396..2216791 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  AB434_RS10450 (AB434_2342) mecA 2217151..2217810 (+) 660 WP_014095727.1 adaptor protein MecA -
  AB434_RS10455 (AB434_2344) - 2218102..2219286 (+) 1185 WP_235221818.1 competence protein CoiA -
  AB434_RS10460 (AB434_2345) pepF 2219354..2221168 (+) 1815 WP_035182049.1 oligoendopeptidase F Regulator
  AB434_RS10465 (AB434_2346) - 2221265..2221453 (-) 189 WP_014095724.1 hypothetical protein -
  AB434_RS10470 (AB434_2349) - 2221915..2222772 (-) 858 WP_014095723.1 ClpXP adapter SpxH family protein -
  AB434_RS10475 (AB434_2350) - 2222769..2223170 (-) 402 WP_014095722.1 globin -
  AB434_RS18955 (AB434_2352) - 2224144..2224314 (+) 171 WP_155375939.1 hypothetical protein -
  AB434_RS10490 (AB434_2355) - 2224595..2225770 (-) 1176 WP_017551449.1 IS256 family transposase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69515.07 Da        Isoelectric Point: 5.1940

>NTDB_id=149520 AB434_RS10460 WP_035182049.1 2219354..2221168(+) (pepF) [Heyndrickxia coagulans strain S-lac]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYQTVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYEPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFSNTFAST
LSGQVKKNNVVAQIRHYHSAREAALSANHIPEKVYDQLVETVNKHLGLLHRYVALRKKALQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGEEYRSILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYYGTDTAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMTSPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=149520 AB434_RS10460 WP_035182049.1 2219354..2221168(+) (pepF) [Heyndrickxia coagulans strain S-lac]
ATGGAAAATGGGAAAAAAGTACACGCGTTGCCAAGCCGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACCAAACAGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACTTACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATAGACAGCAAAGCAAAAAGCCTTGC
TGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTTTCGATTGAAGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGAGCCGCTGCAATTGTACCGGCACGCATTGGAAGAAATCAATGAGATGCGCCCGCATATTTTATCGAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCAGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTGAACAATGCCGACCT
TGAGTTCCCGACCGTGATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAGAAATTGTATGCAACCTACAAAAAATTCTCCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTTGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTTCGGC
AAACCACATTCCTGAAAAAGTGTACGACCAGCTTGTGGAAACGGTGAACAAGCATCTTGGTTTGCTGCATCGGTATGTTG
CACTGCGCAAAAAAGCGCTGCAGCTTGATGAAGTGCATATGTATGATTTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTAACATATGAAAAAGCGAAAGAGATTGTGCTTGACGGCCTCCATCCGCTCGGCGAGGAATACCGGAGCATTTTGCA
ACAGGCGTTTGAAAACCGCTGGATTGATGTGGTGGAAAATAAGGGAAAACGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCATATCCGTACGGGGATTATTCTATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCACTATTGAATGACTATCTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTATTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTTTTCCGCCAGACGATGTTTGCTGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGTTGACGGCGGAACTTTTAACAGATGAGTATTATAAGCTGAACCAAAAATACTATGGTACGGATACCGC
CATTGATCAGGAAATCGGGCTAGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTATATCGGCTATTTG
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGACGTCACCCCAACCGGTCGAAGA
TGCGTTAAAAGTTTTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.013

0.5

Multiple sequence alignment