Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB434_RS09710 Genome accession   NZ_CP011939
Coordinates   2067518..2068468 (+) Length   316 a.a.
NCBI ID   WP_035182202.1    Uniprot ID   A0AAN0T8M8
Organism   Heyndrickxia coagulans strain S-lac     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062518..2073468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB434_RS09695 - 2063075..2063323 (+) 249 WP_074964141.1 hypothetical protein -
  AB434_RS09700 (AB434_2165) - 2064038..2065213 (-) 1176 WP_017551449.1 IS256 family transposase -
  AB434_RS09705 (AB434_2166) - 2066009..2067205 (+) 1197 WP_225621021.1 PDZ domain-containing protein -
  AB434_RS09710 (AB434_2167) ceuB 2067518..2068468 (+) 951 WP_035182202.1 ABC transporter permease Machinery gene
  AB434_RS09715 (AB434_2168) - 2068461..2069411 (+) 951 WP_035182199.1 iron chelate uptake ABC transporter family permease subunit -
  AB434_RS09720 (AB434_2169) - 2069405..2070163 (+) 759 WP_014095858.1 ABC transporter ATP-binding protein -
  AB434_RS09725 (AB434_2170) - 2070178..2071116 (+) 939 WP_035182195.1 siderophore ABC transporter substrate-binding protein -
  AB434_RS09730 (AB434_2171) - 2071173..2071409 (-) 237 WP_026104642.1 4Fe-4S binding protein -
  AB434_RS09735 (AB434_2173) - 2071715..2072074 (+) 360 WP_225620971.1 DUF5316 family protein -
  AB434_RS09740 (AB434_2174) - 2072108..2072800 (+) 693 WP_013858648.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34408.52 Da        Isoelectric Point: 10.0424

>NTDB_id=149511 AB434_RS09710 WP_035182202.1 2067518..2068468(+) (ceuB) [Heyndrickxia coagulans strain S-lac]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNIGLALVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=149511 AB434_RS09710 WP_035182202.1 2067518..2068468(+) (ceuB) [Heyndrickxia coagulans strain S-lac]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGTCTGATCAGCATCATCA
TTGCAGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTAGTTGCGATCATTCTGTTTTCGGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCACTGGCTGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTGTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGTGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTACAAGCAGGTGGTCAATATCGGCCTTGCCCTTGTCGCGCTGATTACTTCGGCAACTGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAATATTGTGTCCATTTACCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTATTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGACACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516

Multiple sequence alignment