Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   AB684_RS06300 Genome accession   NZ_CP014781
Coordinates   1266475..1267623 (+) Length   382 a.a.
NCBI ID   WP_017474218.1    Uniprot ID   -
Organism   Bacillus licheniformis strain HRBL-15TDI7     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1261475..1272623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB684_RS06280 (AB684_06280) - 1262023..1262478 (+) 456 WP_009328829.1 tripartite tricarboxylate transporter TctB family protein -
  AB684_RS06285 (AB684_06285) - 1262501..1264003 (+) 1503 WP_017474220.1 tripartite tricarboxylate transporter permease -
  AB684_RS06290 (AB684_06290) - 1264023..1264739 (-) 717 WP_009328827.1 response regulator -
  AB684_RS06295 (AB684_06295) - 1264762..1266357 (-) 1596 WP_017474219.1 sensor histidine kinase -
  AB684_RS06300 (AB684_06300) coiA 1266475..1267623 (+) 1149 WP_017474218.1 competence protein CoiA family protein Machinery gene
  AB684_RS06305 (AB684_06305) pepF 1267836..1269665 (+) 1830 WP_282334326.1 oligoendopeptidase F Regulator
  AB684_RS22710 - 1269722..1269889 (-) 168 WP_009328823.1 hypothetical protein -
  AB684_RS06310 (AB684_06310) spxH 1270301..1271203 (-) 903 WP_009328822.1 protease adaptor protein SpxH -
  AB684_RS06315 (AB684_06315) - 1271200..1271598 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  AB684_RS06320 (AB684_06320) - 1271880..1272533 (-) 654 WP_009328821.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 44663.06 Da        Isoelectric Point: 9.9815

>NTDB_id=149499 AB684_RS06300 WP_017474218.1 1266475..1267623(+) (coiA) [Bacillus licheniformis strain HRBL-15TDI7]
MFSAMIDQGGTICLADGYKAEDLKRLRKRHAFYCPVCRCELDLKIGSVKLPHFAHKPDAACPVPHEPESPYHLKGKRLLY
EWLGRQGLRPVLEPYLQEIRQRPDLLLEHGTRQVAVEFQCANLNAAAYRKRTEGFLRLGIEPVWILGGNRIKRLTGDLFQ
LSRFHWQFIQKSDKPPKLLFFCPEQKAFIILEHLIPFQTNKTSASLRFLPLAEASWRNVTERESRSPLQLKGWKKNILSF
RMSAVRFLSKETKQIAALFYENHQLPLPFFPSEAFLPVLSGYIFAHPVYVWQGYLFLFITKHDTFRLQSALHYMDWLIKG
KRLKLRWSGRQTAADAVGEYICFLHKKGFLVRKEEFYYSAGSFVPEPRLEALLKRDEHYFSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=149499 AB684_RS06300 WP_017474218.1 1266475..1267623(+) (coiA) [Bacillus licheniformis strain HRBL-15TDI7]
ATGTTCAGTGCAATGATCGATCAAGGCGGGACCATCTGCCTTGCCGACGGATACAAAGCCGAAGATCTCAAGCGATTGAG
AAAAAGACATGCATTTTACTGCCCGGTGTGCCGGTGTGAACTCGACCTGAAAATCGGTTCCGTCAAGCTTCCGCATTTCG
CTCATAAGCCGGATGCAGCATGTCCGGTGCCCCATGAACCGGAGAGCCCCTATCACCTGAAAGGAAAGCGGCTGTTGTAC
GAATGGCTTGGCAGACAAGGACTCCGCCCGGTGCTTGAACCGTATTTGCAAGAGATCAGACAAAGGCCCGATTTGCTGCT
GGAACACGGAACCCGCCAGGTTGCGGTTGAATTTCAATGTGCGAATCTCAATGCCGCAGCGTATCGCAAAAGGACCGAAG
GCTTTCTCAGACTGGGAATCGAGCCCGTATGGATTCTCGGCGGAAACCGGATAAAACGCTTGACGGGGGATTTATTTCAG
CTTTCGCGGTTTCACTGGCAGTTCATTCAGAAAAGCGACAAGCCCCCAAAGCTCCTGTTTTTTTGCCCCGAACAAAAGGC
TTTCATCATCCTCGAACACCTCATTCCCTTTCAAACAAACAAAACATCCGCATCCTTGCGCTTTCTTCCTCTTGCTGAAG
CAAGCTGGCGTAATGTAACAGAACGAGAAAGCCGTTCGCCTCTCCAGCTCAAAGGCTGGAAAAAGAACATCCTCAGCTTT
CGGATGTCGGCCGTGCGTTTTTTATCAAAAGAAACGAAGCAGATTGCCGCCCTCTTTTATGAAAATCATCAGCTTCCGCT
CCCGTTTTTTCCCTCAGAAGCCTTTCTCCCGGTGCTGTCAGGCTATATTTTTGCCCACCCGGTTTATGTATGGCAAGGGT
ACCTTTTTTTATTTATAACGAAGCATGATACATTTCGCCTGCAGTCTGCGCTTCACTATATGGACTGGCTCATCAAGGGC
AAAAGGCTGAAGCTGAGATGGAGCGGGCGGCAAACGGCTGCGGATGCCGTCGGTGAATACATTTGTTTTTTGCATAAAAA
AGGATTTTTGGTGAGGAAAGAGGAATTTTATTATTCCGCGGGTTCTTTTGTTCCGGAGCCGCGGTTAGAGGCGCTGTTAA
AAAGGGATGAACATTATTTTTCCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

42.308

95.288

0.403