Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   TZ57_RS05105 Genome accession   NZ_CP011938
Coordinates   1025654..1026283 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C43(DE3)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020654..1031283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TZ57_RS05080 (TZ57_05085) ycbZ 1021055..1022815 (-) 1761 WP_000156531.1 Lon protease family protein -
  TZ57_RS05085 (TZ57_05090) matP 1023001..1023453 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  TZ57_RS05090 (TZ57_05095) ompA 1023529..1024569 (-) 1041 WP_000750416.1 porin OmpA -
  TZ57_RS05100 (TZ57_05105) sulA 1024926..1025435 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  TZ57_RS05105 (TZ57_05110) sxy/tfoX 1025654..1026283 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  TZ57_RS05110 (TZ57_05115) yccS 1026246..1028408 (-) 2163 WP_000875061.1 YccS family putative transporter -
  TZ57_RS05115 (TZ57_05120) yccF 1028418..1028864 (-) 447 WP_001261235.1 YccF domain-containing protein -
  TZ57_RS05120 (TZ57_05125) helD 1028987..1031041 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=149471 TZ57_RS05105 WP_000839153.1 1025654..1026283(+) (sxy/tfoX) [Escherichia coli strain C43(DE3)]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=149471 TZ57_RS05105 WP_000839153.1 1025654..1026283(+) (sxy/tfoX) [Escherichia coli strain C43(DE3)]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment