Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A1D14_RS13605 Genome accession   NZ_CP014760
Coordinates   2974315..2975106 (-) Length   263 a.a.
NCBI ID   WP_014842650.1    Uniprot ID   -
Organism   Legionella pneumophila strain F4469     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969315..2980106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D14_RS13595 (A1D14_13230) legS1 2970461..2971618 (-) 1158 WP_027224808.1 Dot/Icm T4SS effector LegS1 -
  A1D14_RS16010 - 2971873..2972031 (+) 159 WP_172407113.1 hypothetical protein -
  A1D14_RS13600 (A1D14_13235) dacB 2972430..2974223 (-) 1794 WP_027224807.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  A1D14_RS13605 (A1D14_13240) spo0J 2974315..2975106 (-) 792 WP_014842650.1 ParB/RepB/Spo0J family partition protein Regulator
  A1D14_RS13610 (A1D14_13245) ceg33 2975223..2975726 (-) 504 WP_027224806.1 Dot/Icm T4SS effector Ceg33 -
  A1D14_RS13615 (A1D14_13250) - 2975900..2976649 (-) 750 WP_027224805.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  A1D14_RS13620 (A1D14_13255) rsmB 2976646..2977929 (-) 1284 WP_027224804.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  A1D14_RS13625 (A1D14_13260) fmt 2977926..2978870 (-) 945 WP_027224803.1 methionyl-tRNA formyltransferase -
  A1D14_RS13630 (A1D14_13265) def 2978867..2979379 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30073.19 Da        Isoelectric Point: 5.9797

>NTDB_id=149444 A1D14_RS13605 WP_014842650.1 2974315..2975106(-) (spo0J) [Legionella pneumophila strain F4469]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQVIGEEWSVRHLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=149444 A1D14_RS13605 WP_014842650.1 2974315..2975106(-) (spo0J) [Legionella pneumophila strain F4469]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCCTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCGGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTATTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCACCAGGTTATTGGAGAGGAATGGTCTGT
CAGACACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369

Multiple sequence alignment