Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A1D13_RS13040 Genome accession   NZ_CP014759
Coordinates   2851415..2852098 (+) Length   227 a.a.
NCBI ID   WP_027224292.1    Uniprot ID   -
Organism   Legionella pneumophila strain F4468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2846415..2857098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D13_RS13020 (A1D13_12700) - 2846429..2848162 (+) 1734 WP_027224288.1 tetratricopeptide repeat protein -
  A1D13_RS13025 (A1D13_12705) - 2848268..2849656 (-) 1389 WP_027224289.1 phosphomannomutase/phosphoglucomutase -
  A1D13_RS13030 (A1D13_12710) dut 2849657..2850115 (-) 459 WP_027224290.1 dUTP diphosphatase -
  A1D13_RS13035 (A1D13_12715) coaBC 2850142..2851338 (-) 1197 WP_027224291.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A1D13_RS13040 (A1D13_12720) radC 2851415..2852098 (+) 684 WP_027224292.1 RadC family protein Machinery gene
  A1D13_RS13045 (A1D13_12725) - 2852134..2852370 (+) 237 WP_014844636.1 hypothetical protein -
  A1D13_RS13050 (A1D13_12730) lepB 2852450..2856334 (+) 3885 WP_061722818.1 Dot/Icm T4SS GTPase-activating effector LepB -
  A1D13_RS13055 (A1D13_12735) thpR 2856459..2857022 (-) 564 WP_027265362.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25699.31 Da        Isoelectric Point: 6.7654

>NTDB_id=149373 A1D13_RS13040 WP_027224292.1 2851415..2852098(+) (radC) [Legionella pneumophila strain F4468]
MMVAHTAQQLDLREKLLTNGAHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=149373 A1D13_RS13040 WP_027224292.1 2851415..2852098(+) (radC) [Legionella pneumophila strain F4468]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGCACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAGTCAATCCATGGATTAGGAGAGGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACCTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.393

94.273

0.419