Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACP86_RS02410 Genome accession   NZ_CP011929
Coordinates   513439..514659 (+) Length   406 a.a.
NCBI ID   WP_053112653.1    Uniprot ID   A0A0K1U5U5
Organism   Marinobacter sp. CP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508439..519659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACP86_RS02390 (ACP86_02385) - 508682..509125 (-) 444 WP_053112649.1 pilin -
  ACP86_RS02395 (ACP86_02390) - 509185..510714 (-) 1530 WP_053112650.1 O-antigen ligase family protein -
  ACP86_RS02400 (ACP86_02395) - 510833..511330 (-) 498 WP_053112651.1 pilin -
  ACP86_RS02405 (ACP86_02400) pilB 511718..513436 (+) 1719 WP_053112652.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACP86_RS02410 (ACP86_02405) pilC 513439..514659 (+) 1221 WP_053112653.1 type II secretion system F family protein Machinery gene
  ACP86_RS02415 (ACP86_02410) pilD 514726..515601 (+) 876 WP_053112654.1 prepilin peptidase Machinery gene
  ACP86_RS02420 (ACP86_02415) coaE 515605..516204 (+) 600 WP_053112655.1 dephospho-CoA kinase -
  ACP86_RS02425 (ACP86_02420) - 516197..517291 (+) 1095 WP_053112656.1 hypothetical protein -
  ACP86_RS02430 (ACP86_02425) tsaA 517291..518034 (+) 744 WP_053112657.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44394.20 Da        Isoelectric Point: 9.0304

>NTDB_id=149343 ACP86_RS02410 WP_053112653.1 513439..514659(+) (pilC) [Marinobacter sp. CP1]
MAEKAQKLESYIWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDVAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMGIRNDIASGTSFAGALRKYPRHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
ELLKKKVKKAMTYPIAVVVVAIIVTAILLVKVVPQFESLFGGFGAELPVFTQMVIRLSEWMQSWWFVVLLGITGTIFLFK
EAIRRSQTFSDFVDKYTLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVSGATGNAVYRDAIQQIKTDVSSGT
QLQAAMRQQDIFPVMAVQLTAIGEESGNLDEMLSKVAEHYEGVVDDMVDNLTALMEPMIMVVLGVLVGGLIVAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=149343 ACP86_RS02410 WP_053112653.1 513439..514659(+) (pilC) [Marinobacter sp. CP1]
ATGGCAGAGAAAGCACAGAAGCTGGAATCGTATATTTGGGAAGGGAAGGACCGTAAGGGTAATAAATCCAAAGGTGAACT
CACCGGTTCTAACCTTGCGCTGGTGAAAGCGCAGCTTCGCAAACAAGGTATTATTCCGGACAAGGTGAAGAAGAAGCCCA
AGCCATTGTTCGGTGGCAGCAAGAAGATAACACCCTTTGACGTTGCCATGTTGACGCGCCAGCTTGCGACAATGATGAAG
GCAGGCGTACCACTTGTGCAGAGCTTCGACATCGTTGCCGATGGCCTCGAAAACAAGGGGCTTCAGGAACTGGTTATGGG
TATTCGCAACGACATTGCCTCCGGCACCAGCTTTGCCGGGGCTCTTCGTAAGTATCCAAGGCACTTTGACGATCTGTACT
GCAACCTTGTGGATTCAGGCGAGAAGGCCGGTGCCCTCGAACAGATGCTAGACCGAATCGCCACCTACCTTGAAAAAACA
GAGTTGCTCAAGAAGAAAGTCAAAAAGGCAATGACCTACCCGATTGCCGTAGTAGTTGTGGCAATCATTGTTACAGCCAT
TCTGCTCGTGAAGGTTGTTCCCCAATTCGAAAGTCTATTCGGTGGCTTTGGTGCTGAGCTGCCAGTATTCACCCAGATGG
TTATACGGCTCTCTGAATGGATGCAGTCCTGGTGGTTTGTCGTTTTGTTAGGAATTACTGGGACCATTTTTCTCTTCAAG
GAAGCAATCCGGAGATCCCAAACCTTTTCCGATTTTGTCGATAAATACACTTTGAAGCTACCTGTTGTGGGCGAAATTCT
CGACAAGTCCGCTGTGGCGAAGTTTGGGCGAGTCCTCTCGACAACCTTTGCAGCGGGCGTTCCCCTTGTTGACGCACTCG
ACTCGGTATCCGGGGCAACTGGCAACGCTGTCTATCGAGATGCTATTCAACAGATCAAAACTGATGTATCCAGCGGCACG
CAGTTGCAGGCCGCCATGCGTCAGCAAGATATCTTCCCAGTTATGGCTGTACAGTTAACCGCAATTGGCGAGGAATCGGG
TAATCTTGACGAAATGCTCTCGAAAGTAGCAGAGCACTACGAGGGAGTTGTGGATGACATGGTCGACAACCTTACAGCAC
TCATGGAACCCATGATTATGGTTGTTCTTGGTGTTCTTGTTGGTGGTCTGATCGTTGCGATGTATCTGCCGATCTTCCAG
ATGGGGCAGGTTGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K1U5U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.667

99.754

0.665
  pilC Acinetobacter baumannii D1279779

57.778

99.754

0.576
  pilC Acinetobacter baylyi ADP1

57.389

100

0.574
  pilC Legionella pneumophila strain ERS1305867

52.709

100

0.527
  pilG Neisseria gonorrhoeae MS11

42.611

100

0.426
  pilG Neisseria meningitidis 44/76-A

42.118

100

0.421
  pilC Vibrio cholerae strain A1552

40.887

100

0.409
  pilC Vibrio campbellii strain DS40M4

40.295

100

0.404

Multiple sequence alignment