Detailed information NTG0149340

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A1D13_RS06495
• Genome accession: NZ_CP014759
• Coordinates: 1397291..1398316 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain F4468
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1392291..1403316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A1D13_RS06465 (A1D13_06310)	-	1392723..1393040 (+)	318	WP_014843747.1	DUF2845 domain-containing protein	-
A1D13_RS06470 (A1D13_06315)	-	1393077..1393448 (+)	372	WP_014843748.1	protease inhibitor I42 family protein	-
A1D13_RS06475 (A1D13_06320)	-	1393505..1395220 (-)	1716	WP_027224097.1	NAD-dependent malic enzyme	-
A1D13_RS06480 (A1D13_06325)	-	1395300..1395683 (+)	384	WP_014843750.1	hypothetical protein	-
A1D13_RS06485 (A1D13_06330)	surE	1395686..1396444 (+)	759	WP_014841465.1	5'/3'-nucleotidase SurE	-
A1D13_RS06490 (A1D13_06335)	-	1396463..1397206 (+)	744	WP_027224096.1	peptidoglycan DD-metalloendopeptidase family protein	-
A1D13_RS06495 (A1D13_06340)	rpoS	1397291..1398316 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
A1D13_RS06500 (A1D13_06345)	hmgA	1398419..1399669 (-)	1251	WP_014843752.1	homogentisate 1,2-dioxygenase	-
A1D13_RS06505 (A1D13_06350)	-	1399816..1400559 (+)	744	WP_027224095.1	YebC/PmpR family DNA-binding transcriptional regulator	-
A1D13_RS06510 (A1D13_06355)	ruvC	1400559..1401083 (+)	525	WP_027224094.1	crossover junction endodeoxyribonuclease RuvC	-
A1D13_RS06515 (A1D13_06360)	ruvA	1401080..1401679 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
A1D13_RS06520 (A1D13_06365)	-	1401731..1402051 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=149340 A1D13_RS06495 WP_011213596.1 1397291..1398316(+) (rpoS) [Legionella pneumophila strain F4468]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=149340 A1D13_RS06495 WP_011213596.1 1397291..1398316(+) (rpoS) [Legionella pneumophila strain F4468]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGCT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGCTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACTTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGATGTTGGTAAGGAAATTGATTTGACCCGTGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548