Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AS588_RS19015 Genome accession   NZ_CP014700
Coordinates   3918345..3919196 (-) Length   283 a.a.
NCBI ID   WP_015387405.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3913345..3924196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS18990 (AS588_18990) - 3913514..3915517 (-) 2004 WP_015387408.1 molybdopterin-dependent oxidoreductase -
  AS588_RS18995 (AS588_18995) - 3915564..3915770 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  AS588_RS19000 (AS588_19000) - 3915856..3916881 (-) 1026 WP_088005468.1 hypothetical protein -
  AS588_RS19005 (AS588_19005) - 3917164..3917526 (+) 363 Protein_3798 N-acetyltransferase family protein -
  AS588_RS19010 (AS588_19010) yyaC 3917701..3918315 (+) 615 WP_004392969.1 spore protease YyaC -
  AS588_RS19015 (AS588_19015) spo0J 3918345..3919196 (-) 852 WP_015387405.1 ParB/RepB/Spo0J family partition protein Regulator
  AS588_RS19020 (AS588_19020) soj 3919189..3919950 (-) 762 WP_004392964.1 sporulation initiation inhibitor protein Soj -
  AS588_RS19025 (AS588_19025) noc 3920249..3921100 (-) 852 WP_007409900.1 nucleoid occlusion protein -
  AS588_RS19030 (AS588_19030) rsmG 3921222..3921941 (-) 720 WP_014306213.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AS588_RS19035 (AS588_19035) mnmG 3921955..3923841 (-) 1887 WP_004392959.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32382.30 Da        Isoelectric Point: 8.3471

>NTDB_id=149226 AS588_RS19015 WP_015387405.1 3918345..3919196(-) (spo0J) [Bacillus amyloliquefaciens strain S499]
MAKGGLGKGINALFNQVDLSEETVEEIKISDLRPNPYQPRKQFDDESLAELKESIIQHGILQPIIVRKSLKGYDIVAGER
RYRAAKLAGKETVPAIVRDLSESLMREIALLENLQREDLSPLEEALAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLL
TLPESIQNLIAEGTLSMGHGRTLLGLKNKNKLEQLVKKVVEEQLNVRQLEQLIQQLNNNVPRETKKKEPVQDVVLKERES
YLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLERILELLSEREA

Nucleotide


Download         Length: 852 bp        

>NTDB_id=149226 AS588_RS19015 WP_015387405.1 3918345..3919196(-) (spo0J) [Bacillus amyloliquefaciens strain S499]
ATGGCTAAAGGCGGGCTCGGAAAAGGGATTAACGCGTTGTTTAATCAGGTTGATTTGTCTGAAGAGACAGTGGAAGAAAT
TAAAATCAGTGATTTACGCCCCAATCCTTATCAGCCAAGAAAACAATTTGATGATGAGTCATTAGCTGAACTGAAGGAAT
CCATCATTCAGCATGGCATTCTTCAGCCCATTATCGTGAGAAAATCATTGAAGGGCTATGATATTGTAGCCGGCGAACGC
CGTTACCGCGCCGCAAAACTTGCCGGTAAAGAGACAGTGCCGGCTATCGTGCGGGATTTATCTGAATCGCTGATGCGGGA
AATCGCTCTTTTGGAAAACCTTCAGCGTGAAGACTTATCACCGCTTGAAGAAGCTCTGGCATATGACTCACTGCTGAAGC
ATTTGGATTTAACCCAGGAACAGCTCGCTAAACGGCTCGGGAAAAGCAGGCCTCATATTGCCAACCATTTAAGACTGCTG
ACGCTGCCGGAAAGCATCCAGAACCTCATTGCAGAAGGTACGTTATCCATGGGACACGGCAGAACCTTGCTTGGCTTGAA
AAATAAAAACAAGCTTGAACAGCTTGTGAAGAAAGTGGTTGAAGAACAGCTGAACGTCCGCCAGCTTGAGCAGCTGATTC
AGCAGTTAAACAACAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTTCAAGATGTTGTGTTAAAAGAGCGGGAATCG
TATTTGCAAAATTACTTCGGAACAACAGTCAATATTAAGAGACAAAAGAAAAAAGGGAAGATTGAGATTGAGTTTTTCTC
AAATGAAGATCTTGAACGTATCCTGGAACTATTGTCCGAAAGAGAAGCGTAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(164-215)

ParB/Sulfiredoxin domain (ParB_N)

(25-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.538

91.873

0.382

Multiple sequence alignment