Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AS588_RS18335 Genome accession   NZ_CP014700
Coordinates   3781770..3782459 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3776770..3787459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS18315 (AS588_18315) - 3777674..3778021 (-) 348 WP_004393256.1 YxeA family protein -
  AS588_RS18320 (AS588_18320) yxdM 3778035..3779903 (-) 1869 WP_015387485.1 ABC transporter permease YxdM -
  AS588_RS18325 (AS588_18325) yxdL 3779878..3780651 (-) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  AS588_RS18330 (AS588_18330) yxdK 3780796..3781773 (-) 978 WP_014306127.1 two-component system sensor histidine kinase YxdK -
  AS588_RS18335 (AS588_18335) braR 3781770..3782459 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  AS588_RS18340 (AS588_18340) iolJ 3782567..3783439 (-) 873 WP_015387484.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  AS588_RS18345 (AS588_18345) iolI 3783442..3784284 (-) 843 WP_015387483.1 2-keto-myo-inositol isomerase -
  AS588_RS18350 (AS588_18350) - 3784372..3785241 (-) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  AS588_RS18355 (AS588_18355) - 3785260..3786294 (-) 1035 WP_015387481.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=149220 AS588_RS18335 WP_004393241.1 3781770..3782459(-) (braR) [Bacillus amyloliquefaciens strain S499]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=149220 AS588_RS18335 WP_004393241.1 3781770..3782459(-) (braR) [Bacillus amyloliquefaciens strain S499]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGCGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTATGCCGCCAAGCAGGGTGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393