Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABU16_RS15890 Genome accession   NZ_CP011882
Coordinates   3115832..3116452 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain TO-A JPC     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3110832..3121452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS15850 (ABU16_3141) ypqE 3111963..3112469 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  ABU16_RS15855 (ABU16_3142) ypqA 3112607..3113026 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ABU16_RS15860 (ABU16_3143) yppG 3113047..3113424 (-) 378 WP_004398696.1 YppG family protein -
  ABU16_RS15865 (ABU16_3144) yppF 3113612..3113800 (+) 189 WP_003230690.1 YppF family protein -
  ABU16_RS15870 (ABU16_3145) yppE 3113839..3114210 (-) 372 WP_003246080.1 YppE family protein -
  ABU16_RS15875 (ABU16_3146) yppD 3114256..3114501 (-) 246 WP_004398488.1 YppD family protein -
  ABU16_RS15880 (ABU16_3147) sspM 3114700..3114804 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ABU16_RS15885 (ABU16_3148) yppC 3114829..3115791 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ABU16_RS15890 (ABU16_3149) recU 3115832..3116452 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ABU16_RS15895 (ABU16_3150) ponA 3116474..3119218 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  ABU16_RS15900 (ABU16_3151) ypoC 3119294..3119788 (-) 495 WP_009967579.1 YpoC family protein -
  ABU16_RS15905 (ABU16_3152) nth 3119785..3120444 (-) 660 WP_009967580.1 endonuclease III -
  ABU16_RS15910 (ABU16_3153) dnaD 3120463..3121161 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=149192 ABU16_RS15890 WP_004399067.1 3115832..3116452(+) (recU) [Bacillus subtilis strain TO-A JPC]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=149192 ABU16_RS15890 WP_004399067.1 3115832..3116452(+) (recU) [Bacillus subtilis strain TO-A JPC]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment