Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AS588_RS13810 Genome accession   NZ_CP014700
Coordinates   2896224..2896454 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain S499     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2891224..2901454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS13800 (AS588_13800) spoVT 2891948..2892484 (-) 537 WP_004264646.1 stage V sporulation protein T -
  AS588_RS13805 (AS588_13805) mfd 2892621..2896154 (-) 3534 WP_015388787.1 transcription-repair coupling factor -
  AS588_RS13810 (AS588_13810) subA/fin 2896224..2896454 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  AS588_RS13815 (AS588_13815) pth 2896516..2897082 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  AS588_RS13820 (AS588_13820) - 2897167..2897775 (-) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  AS588_RS13825 (AS588_13825) - 2897860..2898813 (-) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  AS588_RS13830 (AS588_13830) glmU 2898835..2900205 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AS588_RS13835 (AS588_13835) spoVG 2900397..2900690 (-) 294 WP_004264660.1 septation regulator SpoVG -
  AS588_RS13840 (AS588_13840) ridA 2900886..2901266 (-) 381 WP_015388788.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=149190 AS588_RS13810 WP_004264650.1 2896224..2896454(-) (subA/fin) [Bacillus amyloliquefaciens strain S499]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=149190 AS588_RS13810 WP_004264650.1 2896224..2896454(-) (subA/fin) [Bacillus amyloliquefaciens strain S499]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCAACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868

Multiple sequence alignment