Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABU16_RS12680 Genome accession   NZ_CP011882
Coordinates   2427311..2427589 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain TO-A JPC     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2422311..2432589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS12660 (ABU16_2501) - 2423498..2424409 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  ABU16_RS12665 (ABU16_2502) ampS 2424443..2425675 (-) 1233 WP_003232341.1 aminopeptidase -
  ABU16_RS21855 (ABU16_2503) ykpC 2425785..2425919 (-) 135 WP_003238865.1 protein YkpC -
  ABU16_RS12675 (ABU16_2504) mreBH 2426020..2427027 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  ABU16_RS12680 (ABU16_2505) abrB 2427311..2427589 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  ABU16_RS12685 (ABU16_2506) kinC 2427779..2429065 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  ABU16_RS12690 (ABU16_2507) ykqA 2429081..2429908 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  ABU16_RS12695 (ABU16_2508) ktrC 2429971..2430636 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ABU16_RS12700 (ABU16_2509) ade 2430792..2432525 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=149187 ABU16_RS12680 WP_003244728.1 2427311..2427589(+) (abrB) [Bacillus subtilis strain TO-A JPC]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=149187 ABU16_RS12680 WP_003244728.1 2427311..2427589(+) (abrB) [Bacillus subtilis strain TO-A JPC]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment