Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ABU16_RS12560 Genome accession   NZ_CP011882
Coordinates   2403233..2403808 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain TO-A JPC     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2398233..2408808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS12530 (ABU16_2475) dapD 2398419..2399129 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ABU16_RS12535 (ABU16_2476) dapI 2399199..2400323 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  ABU16_RS12540 (ABU16_2477) ykuS 2400385..2400630 (+) 246 WP_003232382.1 YkuS family protein -
  ABU16_RS12545 (ABU16_2478) mscT 2400667..2401470 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  ABU16_RS12550 (ABU16_2479) ahpA 2401707..2402249 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ABU16_RS12555 (ABU16_2480) ykuV 2402321..2402767 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  ABU16_RS12560 (ABU16_2481) rok 2403233..2403808 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ABU16_RS12565 (ABU16_2482) cse15 2403849..2404814 (-) 966 WP_003245018.1 spore protein Cse15 -
  ABU16_RS12570 (ABU16_2483) mobA 2404951..2405550 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  ABU16_RS12575 (ABU16_2484) moeB 2405601..2406620 (+) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  ABU16_RS12580 (ABU16_2485) glp 2406638..2407930 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  ABU16_RS12585 (ABU16_2486) mobB 2407891..2408412 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=149186 ABU16_RS12560 WP_003232378.1 2403233..2403808(+) (rok) [Bacillus subtilis strain TO-A JPC]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=149186 ABU16_RS12560 WP_003232378.1 2403233..2403808(+) (rok) [Bacillus subtilis strain TO-A JPC]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment