Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABU16_RS12440 Genome accession   NZ_CP011882
Coordinates   2384006..2384470 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain TO-A JPC     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379006..2389470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS12420 (ABU16_2453) kinA 2379472..2381292 (+) 1821 WP_048217637.1 sporulation histidine kinase KinA -
  ABU16_RS12425 (ABU16_2454) dapX 2381303..2382484 (-) 1182 WP_003232415.1 aminotransferase A -
  ABU16_RS21850 (ABU16_2455) - 2382686..2382847 (-) 162 WP_003245246.1 hypothetical protein -
  ABU16_RS12435 (ABU16_2456) cheV 2383051..2383962 (+) 912 WP_009967126.1 chemotaxis protein CheV -
  ABU16_RS12440 (ABU16_2457) kre 2384006..2384470 (-) 465 WP_003232406.1 YkyB family protein Regulator
  ABU16_RS12445 (ABU16_2458) ykuC 2384596..2385888 (-) 1293 WP_003245267.1 MFS transporter -
  ABU16_RS12450 (ABU16_2459) ltdD 2385964..2386458 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  ABU16_RS12455 (ABU16_2460) ppeE 2386515..2387375 (-) 861 WP_003232400.1 metallophosphoesterase -
  ABU16_RS12460 (ABU16_2461) fadH 2387518..2388282 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=149185 ABU16_RS12440 WP_003232406.1 2384006..2384470(-) (kre) [Bacillus subtilis strain TO-A JPC]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=149185 ABU16_RS12440 WP_003232406.1 2384006..2384470(-) (kre) [Bacillus subtilis strain TO-A JPC]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment