Detailed information NTG0149184

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AS588_RS12690
• Genome accession: NZ_CP014700
• Coordinates: 2689517..2690638 (-)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain S499
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2684517..2695638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AS588_RS12670 (AS588_12670)	-	2684966..2685661 (-)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-
AS588_RS12675 (AS588_12675)	-	2685716..2686675 (-)	960	WP_003156656.1	metal ABC transporter substrate-binding protein	-
AS588_RS12680 (AS588_12680)	-	2686860..2688539 (-)	1680	WP_015388736.1	glycoside hydrolase family 13 protein	-
AS588_RS12685 (AS588_12685)	-	2688622..2689401 (-)	780	WP_015388737.1	glucose 1-dehydrogenase	-
AS588_RS12690 (AS588_12690)	rapF	2689517..2690638 (-)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
AS588_RS12695 (AS588_12695)	-	2690748..2691251 (+)	504	WP_015388738.1	M15 family metallopeptidase	-
AS588_RS12700 (AS588_12700)	-	2691248..2692606 (-)	1359	WP_014304284.1	YcdB/YcdC domain-containing protein	-
AS588_RS12705 (AS588_12705)	-	2692807..2694207 (-)	1401	WP_015388739.1	YcdB/YcdC domain-containing protein	-
AS588_RS12710 (AS588_12710)	-	2694336..2695331 (+)	996	WP_014304282.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=149184 AS588_RS12690 WP_003156660.1 2689517..2690638(-) (rapF) [Bacillus amyloliquefaciens strain S499]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=149184 AS588_RS12690 WP_003156660.1 2689517..2690638(-) (rapF) [Bacillus amyloliquefaciens strain S499]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TATGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402