Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AS588_RS11375 Genome accession   NZ_CP014700
Coordinates   2418309..2418944 (-) Length   211 a.a.
NCBI ID   WP_015388630.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413309..2423944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS11360 (AS588_11360) abc-f 2413533..2415161 (+) 1629 WP_014304445.1 ribosomal protection-like ABC-F family protein -
  AS588_RS11365 (AS588_11365) - 2415300..2416022 (+) 723 WP_003156060.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  AS588_RS11370 (AS588_11370) - 2416057..2418210 (-) 2154 WP_015388629.1 MMPL family transporter -
  AS588_RS11375 (AS588_11375) vraR 2418309..2418944 (-) 636 WP_015388630.1 response regulator transcription factor Regulator
  AS588_RS11380 (AS588_11380) - 2418937..2420097 (-) 1161 WP_031306685.1 sensor histidine kinase -
  AS588_RS11390 (AS588_11390) - 2420563..2420808 (+) 246 WP_015388633.1 hypothetical protein -
  AS588_RS11395 (AS588_11395) - 2420826..2421194 (+) 369 WP_003156070.1 spore coat protein -
  AS588_RS11400 (AS588_11400) - 2421213..2422349 (+) 1137 WP_003156072.1 zinc-dependent alcohol dehydrogenase -
  AS588_RS11405 (AS588_11405) - 2422368..2422565 (+) 198 WP_015388634.1 hypothetical protein -
  AS588_RS11410 (AS588_11410) - 2422580..2422879 (+) 300 WP_003156074.1 spore coat protein -
  AS588_RS20530 - 2422970..2423056 (+) 87 Protein_2296 EamA/RhaT family transporter -
  AS588_RS11415 (AS588_11415) - 2423150..2423728 (-) 579 WP_015388635.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23560.28 Da        Isoelectric Point: 5.9610

>NTDB_id=149172 AS588_RS11375 WP_015388630.1 2418309..2418944(-) (vraR) [Bacillus amyloliquefaciens strain S499]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAAELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREKKMERANANETQLTDKEIIVLQAVAK
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=149172 AS588_RS11375 WP_015388630.1 2418309..2418944(-) (vraR) [Bacillus amyloliquefaciens strain S499]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAGGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGCGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATTATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATTGAATCAGGCGCGAACGGTTATCTGCTGAAGGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AAAAGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGACAAGGAAATCATAGTTCTGCAAGCCGTTGCGAAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(146-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.842

99.052

0.365