Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABU16_RS09400 Genome accession   NZ_CP011882
Coordinates   1836091..1836885 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis strain TO-A JPC     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1831091..1841885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS09370 (ABU16_1849) sxzA 1831930..1832961 (+) 1032 WP_003243057.1 iron ABC transporter permease -
  ABU16_RS09375 (ABU16_1850) yfhB 1833076..1833957 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  ABU16_RS09380 (ABU16_1851) yfhC 1834045..1834629 (+) 585 WP_003243940.1 nitroreductase -
  ABU16_RS09385 (ABU16_1852) yfhD 1834668..1834859 (-) 192 WP_003233561.1 YfhD family protein -
  ABU16_RS21715 (ABU16_1853) yfhE 1834926..1835036 (-) 111 WP_003223230.1 YfhE family protein -
  ABU16_RS09395 (ABU16_1854) yfhF 1835091..1836002 (-) 912 WP_048217629.1 TIGR01777 family oxidoreductase -
  ABU16_RS09400 (ABU16_1855) recX 1836091..1836885 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  ABU16_RS09405 (ABU16_1856) yfhH 1836887..1837201 (+) 315 WP_003244592.1 YfhH family protein -
  ABU16_RS09415 (ABU16_1857) yfhI 1837344..1838537 (+) 1194 WP_003243500.1 MFS transporter -
  ABU16_RS09420 (ABU16_1858) sspK 1838570..1838722 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  ABU16_RS09425 (ABU16_1859) yfhJ 1838847..1839116 (+) 270 WP_003243789.1 YfhJ family protein -
  ABU16_RS09430 (ABU16_1860) yfhK 1839261..1839779 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  ABU16_RS09435 (ABU16_1861) spdL 1839864..1840196 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  ABU16_RS09440 (ABU16_1862) ephM 1840183..1841043 (+) 861 WP_003243419.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=149170 ABU16_RS09400 WP_003243354.1 1836091..1836885(+) (recX) [Bacillus subtilis strain TO-A JPC]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=149170 ABU16_RS09400 WP_003243354.1 1836091..1836885(+) (recX) [Bacillus subtilis strain TO-A JPC]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment