Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AS588_RS09140 Genome accession   NZ_CP014700
Coordinates   2006622..2007293 (-) Length   223 a.a.
NCBI ID   WP_003154900.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001622..2012293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS09115 (AS588_09115) - 2001975..2003225 (-) 1251 WP_003154893.1 sensor histidine kinase -
  AS588_RS09120 (AS588_09120) - 2003291..2003482 (-) 192 WP_003154894.1 hypothetical protein -
  AS588_RS09125 (AS588_09125) - 2003500..2004231 (-) 732 WP_003154895.1 ABC transporter permease -
  AS588_RS09130 (AS588_09130) - 2004212..2005147 (-) 936 WP_015388364.1 ABC transporter ATP-binding protein -
  AS588_RS09135 (AS588_09135) - 2005267..2006625 (-) 1359 WP_003154898.1 sensor histidine kinase -
  AS588_RS09140 (AS588_09140) scnR 2006622..2007293 (-) 672 WP_003154900.1 response regulator transcription factor Regulator
  AS588_RS09145 (AS588_09145) - 2007477..2008970 (-) 1494 WP_003154902.1 UxaA family hydrolase -
  AS588_RS09150 (AS588_09150) - 2008967..2010412 (-) 1446 WP_015388365.1 tagaturonate reductase -
  AS588_RS09155 (AS588_09155) - 2010488..2011486 (-) 999 WP_003154904.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26422.68 Da        Isoelectric Point: 6.5038

>NTDB_id=149150 AS588_RS09140 WP_003154900.1 2006622..2007293(-) (scnR) [Bacillus amyloliquefaciens strain S499]
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=149150 AS588_RS09140 WP_003154900.1 2006622..2007293(-) (scnR) [Bacillus amyloliquefaciens strain S499]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363