Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ABU16_RS02975 Genome accession   NZ_CP011882
Coordinates   586863..586982 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain TO-A JPC     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 581863..591982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS02950 (ABU16_0608) albG 582027..582728 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  ABU16_RS02955 (ABU16_0609) ywhL 582734..584110 (-) 1377 WP_003244415.1 YncE family protein -
  ABU16_RS02960 (ABU16_0610) ywhK 584149..585504 (-) 1356 WP_003227552.1 YncE family protein -
  ABU16_RS22965 - 585501..585731 (-) 231 WP_009968328.1 hypothetical protein -
  ABU16_RS02970 (ABU16_0612) rapF 585734..586879 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  ABU16_RS02975 phrF 586863..586982 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  ABU16_RS02980 (ABU16_0613) ywhH 587081..587554 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  ABU16_RS02985 (ABU16_0614) speB 587586..588458 (-) 873 WP_003227545.1 agmatinase -
  ABU16_RS02990 (ABU16_0615) speE 588519..589349 (-) 831 WP_003227543.1 spermidine synthase -
  ABU16_RS02995 (ABU16_0616) pbpG 589551..591626 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=149149 ABU16_RS02975 WP_009968329.1 586863..586982(+) (phrF) [Bacillus subtilis strain TO-A JPC]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=149149 ABU16_RS02975 WP_009968329.1 586863..586982(+) (phrF) [Bacillus subtilis strain TO-A JPC]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment