Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AS588_RS09075 Genome accession   NZ_CP014700
Coordinates   1989183..1990319 (-) Length   378 a.a.
NCBI ID   WP_150974872.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984183..1995319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS09040 (AS588_09040) - 1984413..1985240 (-) 828 WP_003154867.1 FaeA/PapI family transcriptional regulator -
  AS588_RS09045 (AS588_09045) - 1985230..1985409 (-) 180 WP_003154869.1 hypothetical protein -
  AS588_RS09050 (AS588_09050) xre 1985601..1985939 (+) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  AS588_RS09055 (AS588_09055) - 1986088..1986678 (+) 591 WP_003154873.1 ImmA/IrrE family metallo-endopeptidase -
  AS588_RS20065 - 1986694..1986843 (-) 150 WP_003154875.1 hypothetical protein -
  AS588_RS09060 (AS588_09060) - 1986833..1987438 (-) 606 WP_003154876.1 poly-gamma-glutamate hydrolase family protein -
  AS588_RS09065 (AS588_09065) - 1987548..1987925 (+) 378 WP_003154878.1 PH domain-containing protein -
  AS588_RS09070 (AS588_09070) - 1987963..1988916 (-) 954 WP_003154880.1 N-acetylmuramoyl-L-alanine amidase -
  AS588_RS19880 - 1989059..1989193 (-) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  AS588_RS09075 (AS588_09075) rapC 1989183..1990319 (-) 1137 WP_150974872.1 tetratricopeptide repeat protein Regulator
  AS588_RS09080 (AS588_09080) - 1990524..1990991 (+) 468 WP_014304838.1 DinB family protein -
  AS588_RS09085 (AS588_09085) - 1991139..1991903 (+) 765 WP_015388360.1 sulfite exporter TauE/SafE family protein -
  AS588_RS09090 (AS588_09090) - 1991950..1994835 (-) 2886 WP_003154888.1 type 2 lanthipeptide synthetase LanM family protein -
  AS588_RS20070 - 1994924..1995100 (-) 177 WP_017417596.1 class II lanthipeptide, LchA2/BrtA2 family -
  AS588_RS20075 - 1995137..1995313 (-) 177 WP_017417595.1 class II lanthipeptide, LchA2/BrtA2 family -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45039.26 Da        Isoelectric Point: 4.9159

>NTDB_id=149148 AS588_RS09075 WP_150974872.1 1989183..1990319(-) (rapC) [Bacillus amyloliquefaciens strain S499]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYELKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=149148 AS588_RS09075 WP_150974872.1 1989183..1990319(-) (rapC) [Bacillus amyloliquefaciens strain S499]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATTGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGCGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAACTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATATCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTCAATCTGTTCCAATTTTTGCATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.149

99.471

0.439
  rapF Bacillus subtilis subsp. subtilis str. 168

42.744

100

0.429

Multiple sequence alignment