Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   AS588_RS06460 Genome accession   NZ_CP014700
Coordinates   1363766..1364386 (+) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1358766..1369386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS06425 (AS588_06425) - 1359011..1359184 (+) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AS588_RS06430 (AS588_06430) - 1359258..1359476 (-) 219 WP_003153994.1 YneF family protein -
  AS588_RS06435 (AS588_06435) sirA 1359562..1360008 (-) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  AS588_RS06440 (AS588_06440) recP/tkt 1360160..1362163 (-) 2004 WP_015388180.1 transketolase Machinery gene
  AS588_RS06445 (AS588_06445) - 1362330..1362563 (-) 234 WP_003153997.1 DUF896 domain-containing protein -
  AS588_RS06450 (AS588_06450) - 1362632..1363282 (-) 651 WP_015388181.1 recombinase family protein -
  AS588_RS06455 (AS588_06455) yneA 1363298..1363609 (-) 312 WP_003154001.1 cell division suppressor protein YneA -
  AS588_RS06460 (AS588_06460) dinR/lexA 1363766..1364386 (+) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  AS588_RS06465 (AS588_06465) - 1364727..1365155 (-) 429 WP_003154006.1 hypothetical protein -
  AS588_RS06470 (AS588_06470) - 1365297..1365746 (+) 450 WP_015388182.1 YndM family protein -
  AS588_RS06475 (AS588_06475) - 1365774..1366604 (-) 831 WP_003154011.1 prohibitin family protein -
  AS588_RS20040 - 1366591..1366740 (-) 150 WP_003154013.1 hypothetical protein -
  AS588_RS06480 (AS588_06480) - 1366849..1367670 (-) 822 WP_015388183.1 poly-gamma-glutamate hydrolase family protein -
  AS588_RS06485 (AS588_06485) - 1367947..1368381 (-) 435 WP_014305062.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=149123 AS588_RS06460 WP_003154004.1 1363766..1364386(+) (dinR/lexA) [Bacillus amyloliquefaciens strain S499]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=149123 AS588_RS06460 WP_003154004.1 1363766..1364386(+) (dinR/lexA) [Bacillus amyloliquefaciens strain S499]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACGAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCATATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATTGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTGATCGGCGTATTCAGAGCCGTCCATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927