Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB406_RS03555 Genome accession   NZ_CP011859
Coordinates   721819..722472 (-) Length   217 a.a.
NCBI ID   WP_079206959.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain HXb2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 716819..727472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB406_RS03540 (AB406_0716) - 717637..718719 (-) 1083 WP_079206958.1 serine hydrolase -
  AB406_RS03545 (AB406_0717) - 718831..720486 (-) 1656 WP_064971217.1 ribonucleoside-diphosphate reductase subunit alpha -
  AB406_RS03550 (AB406_0718) - 720534..721508 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  AB406_RS12025 (AB406_0719) - 721591..721731 (+) 141 WP_185114029.1 hypothetical protein -
  AB406_RS03555 (AB406_0720) comF 721819..722472 (-) 654 WP_079206959.1 ComF family protein Machinery gene
  AB406_RS03565 (AB406_0721) - 722698..723249 (-) 552 WP_014938008.1 hypothetical protein -
  AB406_RS03570 (AB406_0722) - 723301..723951 (-) 651 WP_079206961.1 HD domain-containing protein -
  AB406_RS03575 (AB406_0723) gdhA 724083..725441 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  AB406_RS03580 (AB406_0724) dprA 725625..726728 (-) 1104 WP_079206963.1 DNA-processing protein DprA Machinery gene
  AB406_RS03585 (AB406_0725) - 726731..727108 (-) 378 WP_014938004.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25347.46 Da        Isoelectric Point: 9.4150

>NTDB_id=149088 AB406_RS03555 WP_079206959.1 721819..722472(-) (comF) [Riemerella anatipestifer strain HXb2]
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SMERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD

Nucleotide


Download         Length: 654 bp        

>NTDB_id=149088 AB406_RS03555 WP_079206959.1 721819..722472(-) (comF) [Riemerella anatipestifer strain HXb2]
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTTATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTTTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATGGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCATCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

89.862

100

0.899

Multiple sequence alignment