Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AB406_RS03340 Genome accession   NZ_CP011859
Coordinates   671296..673065 (-) Length   589 a.a.
NCBI ID   WP_252563018.1    Uniprot ID   A0A1S7DR89
Organism   Riemerella anatipestifer strain HXb2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 666296..678065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB406_RS03320 (AB406_0678) dinB 666465..667547 (-) 1083 WP_079208501.1 DNA polymerase IV -
  AB406_RS03325 (AB406_0679) - 667632..668402 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  AB406_RS03330 (AB406_0680) - 668426..670438 (-) 2013 WP_014938048.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  AB406_RS03335 (AB406_0681) - 670503..671171 (-) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  AB406_RS03340 (AB406_0682) comEC 671296..673065 (-) 1770 WP_252563018.1 ComEC/Rec2 family competence protein Machinery gene
  AB406_RS03345 (AB406_0683) - 673162..673599 (-) 438 WP_079206922.1 hypothetical protein -
  AB406_RS03350 (AB406_0684) - 673599..675227 (-) 1629 WP_014938044.1 acyl-CoA carboxylase subunit beta -
  AB406_RS03355 (AB406_0685) - 675333..676526 (-) 1194 WP_079206924.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68958.37 Da        Isoelectric Point: 10.0579

>NTDB_id=149084 AB406_RS03340 WP_252563018.1 671296..673065(-) (comEC) [Riemerella anatipestifer strain HXb2]
MKKQILFSLFISFSLGVFLQDLSELSWQQSNIITTLGAISLGLIWVKADWLVRGRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQSFKAVLSVPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKFQ
ARKGVYYRAYARDLRKAPKSELTFSEKMKQWRLEFLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAGTNSNFRRSGLAHI
LAISGTHIAIIFGMVYMLLRLVLPVRFRIGVILLSLSLIWAFTWFIDWGNSVVRACIMLTVYFGFILLQRKPQVLDSLAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNRPMIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLLVLPLMEIVIILSFLITIVFGLGIYWNWLSFTYDWLIKALLRLIGFFGKIEIGSFQDIPLSIWEMGIWAVGLYFLR
EILIRFTWRGFMRLMFSVLLFFGIKMWLDIRAYHDKEAKWHYHYRTKVFSVLDKGKVCFWVADEDNLETLESNLIKPYVI
SKRAESYKVKMMSKEVDEVIFNGKRYLFQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=149084 AB406_RS03340 WP_252563018.1 671296..673065(-) (comEC) [Riemerella anatipestifer strain HXb2]
GTGAAAAAGCAAATTCTCTTTAGCCTTTTTATAAGTTTTTCATTAGGTGTATTTTTGCAAGACCTTAGTGAACTTTCGTG
GCAACAGTCTAATATTATAACCACATTAGGAGCTATTAGCCTTGGATTGATTTGGGTAAAAGCGGATTGGTTAGTTCGAG
GCAGAATTTGGTTACTTAATATCTTTTTTCTCTGTTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCTGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAACTTGTTTTTAAAATTGAACAAAAGCTAAATTCAACGGCTAAAAATAAGCGTTATGA
AATAACAGCATTTCATCAAAATCAATCTTTCAAAGCAGTTTTATCTGTTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAGTCTCAACTAAGTCTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATTTCAA
GCAAGGAAAGGCGTATATTATAGAGCCTATGCCAGAGATTTACGCAAAGCTCCAAAATCAGAGCTCACTTTCTCCGAAAA
AATGAAACAATGGCGATTGGAATTCCTTAGTAATATAGATAAAAACGAAAAACTTTCACAGCAAACTAGAGCTTTCCTAA
AAGGAATTGTATTAGCCGATAGAACAGAGGTAGATGCAGGCACTAATTCCAATTTTAGGCGAAGTGGCTTGGCACATATT
TTGGCTATTTCGGGGACGCACATAGCAATTATATTCGGAATGGTCTATATGCTGTTGAGGTTAGTGTTGCCTGTTAGATT
TCGGATTGGCGTAATATTACTTAGTTTGTCGTTAATTTGGGCTTTTACTTGGTTTATTGATTGGGGAAATTCTGTTGTTA
GAGCCTGTATTATGCTTACGGTTTATTTTGGTTTTATCCTTCTGCAAAGGAAACCGCAAGTTTTGGATTCTTTAGCCTTG
GCAGGATTAGGGATTTTGATGGTGGATACACAAGAGTTGTTTTCGGTGGGATTTCAATTGAGTTTTTCGGCAGTATTGGG
AATTTATTGGTTTAATAGACCTATGATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTGCTTTATACCT
TCACGATGTCCACGGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCAGCGTGGTCTATT
TTGGCTAATCTTTTAGTCCTTCCTTTAATGGAAATTGTGATTATACTATCGTTTTTAATAACGATTGTTTTTGGTTTAGG
GATTTATTGGAATTGGCTATCTTTTACTTATGATTGGTTAATTAAAGCGTTGCTACGGCTGATAGGTTTCTTTGGTAAAA
TAGAGATAGGGTCTTTTCAAGACATACCGTTGAGTATTTGGGAGATGGGTATTTGGGCGGTAGGGCTTTATTTTCTAAGA
GAAATATTGATTCGTTTTACATGGAGAGGTTTTATGAGGTTGATGTTTTCTGTGCTTTTATTTTTCGGGATTAAAATGTG
GCTAGATATCAGAGCTTATCACGATAAAGAAGCAAAGTGGCATTACCATTATCGTACTAAAGTGTTCTCTGTTTTGGATA
AAGGTAAGGTGTGCTTTTGGGTGGCGGATGAAGATAATTTAGAAACGTTAGAAAGTAATCTCATAAAACCTTATGTAATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAAATGATGTCTAAAGAAGTAGATGAGGTTATTTTTAATGGAAAAAGGTATTT
GTTTCAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-479)

Domain of unknown function (DUF4131) (DUF4131)

(32-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7DR89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

96.095

100

0.961

Multiple sequence alignment