Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM48_RS20065 Genome accession   NZ_CP014667
Coordinates   4097462..4098130 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain ECONIH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4092462..4103130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM48_RS20035 (WM48_20010) rfaQ 4092640..4093698 (-) 1059 WP_000360397.1 lipopolysaccharide core heptosyltransferase RfaQ -
  WM48_RS20040 (WM48_20015) waaA 4094111..4095388 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  WM48_RS20045 (WM48_20020) coaD 4095396..4095875 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  WM48_RS20050 (WM48_20025) mutM 4095914..4096723 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  WM48_RS20055 (WM48_20030) rpmG 4096821..4096988 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  WM48_RS20060 (WM48_20035) rpmB 4097009..4097245 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  WM48_RS20065 (WM48_20040) radC 4097462..4098130 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  WM48_RS20070 (WM48_20045) coaBC 4098302..4099522 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  WM48_RS20075 (WM48_20050) dut 4099500..4099958 (+) 459 WP_000976070.1 dUTP diphosphatase -
  WM48_RS20080 (WM48_20055) slmA 4100065..4100661 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  WM48_RS20085 (WM48_20060) pyrE 4100698..4101339 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  WM48_RS20090 (WM48_20065) rph 4101405..4102121 (-) 717 WP_001247094.1 ribonuclease PH -
  WM48_RS20095 (WM48_20070) yicC 4102248..4103111 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=149050 WM48_RS20065 WP_001297375.1 4097462..4098130(-) (radC) [Escherichia coli strain ECONIH2]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=149050 WM48_RS20065 WP_001297375.1 4097462..4098130(-) (radC) [Escherichia coli strain ECONIH2]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGAG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment